Mechanistic understanding from molecular dynamics in pharmaceutical research 2: lipid membrane in drug design

T Róg, M Girych, A Bunker - Pharmaceuticals, 2021 - mdpi.com
We review the use of molecular dynamics (MD) simulation as a drug design tool in the
context of the role that the lipid membrane can play in drug action, ie, the interaction …

Insights into molecular mechanism of action of citrus flavonoids hesperidin and naringin on lipid bilayers using spectroscopic, calorimetric, microscopic and theoretical …

C Altunayar-Unsalan, O Unsalan… - Journal of Molecular …, 2022 - Elsevier
Hesperidin and naringin are predominant flavonoids in citrus fruits and exert various
biological activities. However, mechanism of these activities has not been completely …

Polymer-coated gold nanoparticles and polymeric nanoparticles as nanocarrier of the BP100 antimicrobial peptide through a lung surfactant model

FR Souza, F Fornasier, AS Carvalho, BM Silva… - Journal of Molecular …, 2020 - Elsevier
Pneumonia is caused by microorganisms that settle in the lungs, which may reach the
pulmonary alveoli and cause respiratory failure. Antibiotic treatments are the most used …

The reconciliation between the experimental and calculated octanol-water partition coefficient of 1, 2-dipalmitoyl-sn-glycero-3-phosphatidylcholine using atomistic …

RKM Costa, LMP Souza, RS Silva… - Journal of …, 2023 - Taylor & Francis
The octanol-water partition coefficient of 1, 2-dipalmitoyl-sn-glycero-3-phosphatidylcholine
(DPPC) was investigated using atomistic molecular dynamics simulations via …

Lipophilicity of coarse-grained cholesterol models

F Fornasier, LMP Souza, FR Souza… - Journal of Chemical …, 2020 - ACS Publications
The lipophilicity of cholesterol was investigated by using coarse-grained molecular
dynamics and umbrella sampling. The previous coarse-grained cholesterol models in the …

Tuning the hydrophobicity of a coarse grained model of 1, 2-dipalmitoyl-sn-glycero-3-phosphatidylcholine using the experimental octanol-water partition coefficient

LMP Souza, FR Souza, F Reynaud… - Journal of Molecular …, 2020 - Elsevier
The tuning of DPPC coarse grained models was successfully investigated using coarse
grained molecular dynamics simulation and umbrella sampling. The octanol-water partition …

Sakuranetin interacting with cell membranes models: Surface chemistry combined with molecular simulation

GHCR Pires, VT Freire, RG Pereira… - Colloids and Surfaces B …, 2022 - Elsevier
Sakuranetin, a natural compound with activity in lipidic biointerfaces, was isolated from
Baccharis retusa and studied with two models of lipid membranes: Langmuir monolayers …

Unmodified clay nanosheets at the air–water interface

PH Michels-Brito, A Malfatti-Gasperini, L Mayr… - Langmuir, 2020 - ACS Publications
Quasi-two-dimensional (2D) nanolayers, such as graphene oxide or clay layers, adhere to
gas–liquid or liquid–liquid interfaces. Particularly, clays are of wide general interest in this …

Novel cytotoxic amphiphilic nitro-compounds derived from a synthetic route for paraconic acids

TA Ribeiro, E Machado-Ferreira, LF Guimaraes… - Colloids and Surfaces A …, 2021 - Elsevier
A series of precursors for bioactive paraconic acids (PA) were synthesized and their
cytotoxicity assessed on human cells in vitro. Two amphiphilic nitro-containing precursors …

Naringin Attenuated Acute Lung Injury in Rat Model with Acute Pancreatitis in Pregnancy through Inactivation of p38 MAPK Pathway.

Y Li, L Zhang, J Gong - Signa Vitae, 2020 - search.ebscohost.com
Acute pancreatitis in pregnancy can cause fetal lung injury. Naringin exhibits
antinflammation effect against pulmonary injuries. However, whether naringin can alleviate …