T cell epitope predictions

B Peters, M Nielsen, A Sette - Annual Review of Immunology, 2020 - annualreviews.org
Throughout the body, T cells monitor MHC-bound ligands expressed on the surface of
essentially all cell types. MHC ligands that trigger a T cell immune response are referred to …

The pockets guide to HLA class I molecules

AT Nguyen, C Szeto, S Gras - Biochemical Society Transactions, 2021 - portlandpress.com
Human leukocyte antigens (HLA) are cell-surface proteins that present peptides to T cells.
These peptides are bound within the peptide binding cleft of HLA, and together as a …

High-throughput and sensitive immunopeptidomics platform reveals profound interferonγ-mediated remodeling of the human leukocyte antigen (HLA) ligandome

C Chong, F Marino, HS Pak, J Racle, RT Daniel… - Molecular & Cellular …, 2018 - ASBMB
Comprehensive knowledge of the human leukocyte antigen (HLA) class-I and class-II
peptides presented to T-cells is crucial for designing innovative therapeutics against cancer …

Predicting antigen presentation—what could we learn from a million peptides?

D Gfeller, M Bassani-Sternberg - Frontiers in immunology, 2018 - frontiersin.org
Antigen presentation lies at the heart of immune recognition of infected or malignant cells.
For this reason, important efforts have been made to predict which peptides are more likely …

The length distribution and multiple specificity of naturally presented HLA-I ligands

D Gfeller, P Guillaume, J Michaux, HS Pak… - The Journal of …, 2018 - journals.aai.org
HLA-I molecules bind short peptides and present them for recognition by CD8+ T cells. The
length of HLA-I ligands typically ranges from 8 to 12 aa, but variability is observed across …

Structure based prediction of neoantigen immunogenicity

TP Riley, GLJ Keller, AR Smith, LM Davancaze… - Frontiers in …, 2019 - frontiersin.org
The development of immunological therapies that incorporate peptide antigens presented to
T cells by MHC proteins is a long sought-after goal, particularly for cancer, where mutated …

High-throughput, targeted MHC class I immunopeptidomics using a functional genetics screening platform

PM Bruno, RT Timms, NS Abdelfattah, Y Leng… - Nature …, 2023 - nature.com
Identification of CD8+ T cell epitopes is critical for the development of immunotherapeutics.
Existing methods for major histocompatibility complex class I (MHC class I) ligand discovery …

Unfinished business: evolution of the MHC and the adaptive immune system of jawed vertebrates

J Kaufman - Annual review of immunology, 2018 - annualreviews.org
The major histocompatibility complex (MHC) is a large genetic region with many genes,
including the highly polymorphic classical class I and II genes that play crucial roles in …

Quantification of epitope abundance reveals the effect of direct and cross-presentation on influenza CTL responses

T Wu, J Guan, A Handel, DC Tscharke, J Sidney… - Nature …, 2019 - nature.com
The magnitude of T cell responses to infection is a function of the naïve T cell repertoire
combined with the context and duration of antigen presentation. Using mass spectrometry …

[HTML][HTML] Contemplating immunopeptidomes to better predict them

D Gfeller, Y Liu, J Racle - Seminars in Immunology, 2023 - Elsevier
The identification of T-cell epitopes is key for a complete molecular understanding of
immune recognition mechanisms in infectious diseases, autoimmunity and cancer. T-cell …