[PDF][PDF] Current status of genomic evaluation
Early application of genomic selection relied on SNP estimation with phenotypes or de-
regressed proofs (DRP). Chips of 50k SNP seemed sufficient for an accurate estimation of …
regressed proofs (DRP). Chips of 50k SNP seemed sufficient for an accurate estimation of …
Incorporation of causative quantitative trait nucleotides in single-step GBLUP
Background Much effort is put into identifying causative quantitative trait nucleotides (QTN)
in animal breeding, empowered by the availability of dense single nucleotide polymorphism …
in animal breeding, empowered by the availability of dense single nucleotide polymorphism …
Genome-wide approaches to understanding and improving complex traits in aquaculture species.
C Palaiokostas, RD Houston - CABI Reviews, 2018 - cabidigitallibrary.org
The rapid drop in cost and increase in throughput of nucleic acid sequencing has provided
many opportunities for aquaculture genetics and breeding. Genome-wide genetic marker …
many opportunities for aquaculture genetics and breeding. Genome-wide genetic marker …
[HTML][HTML] Differing genetic trend estimates from traditional and genomic evaluations of genotyped animals as evidence of preselection bias in US Holsteins
The objective of this study was to compare genetic trends from single-step genomic BLUP
(ssGBLUP) and traditional BLUP models for milk production traits of US Holsteins …
(ssGBLUP) and traditional BLUP models for milk production traits of US Holsteins …
Genomic prediction of complex traits in perennial plants: a case for forest trees
F Isik - Genomic prediction of complex traits: Methods and …, 2022 - Springer
This chapter provides an overview of the genomic selection progress in long-lived forest tree
species. Factors affecting the prediction accuracy in genomic prediction are assessed with …
species. Factors affecting the prediction accuracy in genomic prediction are assessed with …
Prediction Accuracies of Genomic Selection for Nine Commercially Important Traits in the Portuguese Oyster (Crassostrea angulata) Using DArT-Seq Technology
SV Vu, C Gondro, NTH Nguyen, AR Gilmour, R Tearle… - Genes, 2021 - mdpi.com
Genomic selection has been widely used in terrestrial animals but has had limited
application in aquaculture due to relatively high genotyping costs. Genomic information has …
application in aquaculture due to relatively high genotyping costs. Genomic information has …
On the equivalence between marker effect models and breeding value models and direct genomic values with the Algorithm for Proven and Young
Background Single-step genomic predictions obtained from a breeding value model require
calculating the inverse of the genomic relationship matrix (G-1). The Algorithm for Proven …
calculating the inverse of the genomic relationship matrix (G-1). The Algorithm for Proven …
Large-scale genomic prediction using singular value decomposition of the genotype matrix
J Ødegård, U Indahl, I Strandén… - Genetics Selection …, 2018 - Springer
Background For marker effect models and genomic animal models, computational
requirements increase with the number of loci and the number of genotyped individuals …
requirements increase with the number of loci and the number of genotyped individuals …
A second-level diagonal preconditioner for single-step SNPBLUP
Background The preconditioned conjugate gradient (PCG) method is an iterative solver of
linear equations systems commonly used in animal breeding. However, the PCG method …
linear equations systems commonly used in animal breeding. However, the PCG method …
[HTML][HTML] Genomic prediction using different single-step methods in the Finnish red dairy cattle population
Single-step genomic prediction models utilizing both genotyped and nongenotyped animals
are likely to become the prevailing tool in genetic evaluations of livestock. Various single …
are likely to become the prevailing tool in genetic evaluations of livestock. Various single …