Protein data bank: a comprehensive review of 3D structure holdings and worldwide utilization by researchers, educators, and students
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB),
funded by the United States National Science Foundation, National Institutes of Health, and …
funded by the United States National Science Foundation, National Institutes of Health, and …
RCSB Protein Data Bank (RCSB. org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from …
Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB
PDB), founding member of the Worldwide Protein Data Bank (wwPDB), is the US data center …
PDB), founding member of the Worldwide Protein Data Bank (wwPDB), is the US data center …
Critical assessment of methods of protein structure prediction (CASP)—Round XIV
Critical assessment of structure prediction (CASP) is a community experiment to advance
methods of computing three‐dimensional protein structure from amino acid sequence. Core …
methods of computing three‐dimensional protein structure from amino acid sequence. Core …
[HTML][HTML] The accuracy of protein structures in solution determined by AlphaFold and NMR
NJ Fowler, MP Williamson - Structure, 2022 - cell.com
Summary In the recent Critical Assessment of Structure Prediction (CASP) competition,
AlphaFold2 performed outstandingly. Its worst predictions were for nuclear magnetic …
AlphaFold2 performed outstandingly. Its worst predictions were for nuclear magnetic …
Predicting protein flexibility with AlphaFold
AlphaFold2 has revolutionized protein structure prediction from amino‐acid sequence. In
addition to protein structures, high‐resolution dynamics information about various protein …
addition to protein structures, high‐resolution dynamics information about various protein …
Structural basis of bacteriophage T5 infection trigger and E. coli cell wall perforation
R Linares, CA Arnaud, G Effantin, C Darnault… - Science …, 2023 - science.org
Most bacteriophages present a tail allowing host recognition, cell wall perforation, and viral
DNA channeling from the capsid to the infected bacterium cytoplasm. The majority of tailed …
DNA channeling from the capsid to the infected bacterium cytoplasm. The majority of tailed …
Protein target highlights in CASP15: Analysis of models by structure providers
LT Alexander, J Durairaj… - Proteins: Structure …, 2023 - Wiley Online Library
We present an in‐depth analysis of selected CASP15 targets, focusing on their biological
and functional significance. The authors of the structures identify and discuss key protein …
and functional significance. The authors of the structures identify and discuss key protein …
More than just pattern recognition: Prediction of uncommon protein structure features by AI methods
O Herzberg, J Moult - … of the National Academy of Sciences, 2023 - National Acad Sciences
The CASP14 experiment demonstrated the extraordinary structure modeling capabilities of
artificial intelligence (AI) methods. That result has ignited a fierce debate about what these …
artificial intelligence (AI) methods. That result has ignited a fierce debate about what these …
Deciphering bacteriophage T5 host recognition mechanism and infection trigger
S Degroux, G Effantin, R Linares, G Schoehn… - Journal of …, 2023 - Am Soc Microbiol
Bacteriophages, viruses infecting bacteria, recognize their host with high specificity, binding
to either saccharide motifs or proteins of the cell wall of their host. In the majority of …
to either saccharide motifs or proteins of the cell wall of their host. In the majority of …
RNA target highlights in CASP15: Evaluation of predicted models by structure providers
The first RNA category of the Critical Assessment of Techniques for Structure Prediction
competition was only made possible because of the scientists who provided experimental …
competition was only made possible because of the scientists who provided experimental …