A survey of methods for 3D histology reconstruction
Histology permits the observation of otherwise invisible structures of the internal topography
of a specimen. Although it enables the investigation of tissues at a cellular level, it is invasive …
of a specimen. Although it enables the investigation of tissues at a cellular level, it is invasive …
[HTML][HTML] Post mortem mapping of connectional anatomy for the validation of diffusion MRI
Diffusion MRI (dMRI) is a unique tool for the study of brain circuitry, as it allows us to image
both the macroscopic trajectories and the microstructural properties of axon bundles in vivo …
both the macroscopic trajectories and the microstructural properties of axon bundles in vivo …
[HTML][HTML] Diffusion MRI and anatomic tracing in the same brain reveal common failure modes of tractography
Anatomic tracing is recognized as a critical source of knowledge on brain circuitry that can
be used to assess the accuracy of diffusion MRI (dMRI) tractography. However, most prior …
be used to assess the accuracy of diffusion MRI (dMRI) tractography. However, most prior …
Open access resource for cellular-resolution analyses of corticocortical connectivity in the marmoset monkey
Understanding the principles of neuronal connectivity requires tools for efficient
quantification and visualization of large datasets. The primate cortex is particularly …
quantification and visualization of large datasets. The primate cortex is particularly …
Towards a comprehensive atlas of cortical connections in a primate brain: Mapping tracer injection studies of the common marmoset into a reference digital template
The marmoset is an emerging animal model for large‐scale attempts to understand primate
brain connectivity, but achieving this aim requires the development and validation of …
brain connectivity, but achieving this aim requires the development and validation of …
[HTML][HTML] Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain
In the first study comparing high angular resolution diffusion MRI (dMRI) in the human brain
to axonal orientation measurements from polarization-sensitive optical coherence …
to axonal orientation measurements from polarization-sensitive optical coherence …
Precise mapping of single neurons by calibrated 3D reconstruction of brain slices reveals topographic projection in mouse visual cortex
Recent breakthroughs in neuroanatomical tracing methods have helped unravel
complicated neural connectivity in whole-brain tissue at single-cell resolution. However, in …
complicated neural connectivity in whole-brain tissue at single-cell resolution. However, in …
Data integration through brain atlasing: Human Brain Project tools and strategies
The Human Brain Project (HBP), an EU Flagship Initiative, is currently building an
infrastructure that will allow integration of large amounts of heterogeneous neuroscience …
infrastructure that will allow integration of large amounts of heterogeneous neuroscience …
Refractive-index matching enhanced polarization sensitive optical coherence tomography quantification in human brain tissue
The importance of polarization-sensitive optical coherence tomography (PS-OCT) has been
increasingly recognized in human brain imaging. Despite the recent progress of PS-OCT in …
increasingly recognized in human brain imaging. Despite the recent progress of PS-OCT in …
Mapping histological slice sequences to the allen mouse brain atlas without 3D reconstruction
Histological brain slices are widely used in neuroscience to study the anatomical
organization of neural circuits. Systematic and accurate comparisons of anatomical data …
organization of neural circuits. Systematic and accurate comparisons of anatomical data …