Soil microbiome engineering for sustainability in a changing environment

JK Jansson, R McClure, RG Egbert - Nature Biotechnology, 2023 - nature.com
Recent advances in microbial ecology and synthetic biology have the potential to mitigate
damage caused by anthropogenic activities that are deleteriously impacting Earth's soil …

Best practices in metabarcoding of fungi: from experimental design to results

L Tedersoo, M Bahram, L Zinger, RH Nilsson… - Molecular …, 2022 - Wiley Online Library
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …

iNAP: an integrated network analysis pipeline for microbiome studies

K Feng, X Peng, Z Zhang, S Gu, Q He, W Shen, Z Wang… - imeta, 2022 - Wiley Online Library
Integrated network analysis pipeline (iNAP) is an online analysis pipeline for generating and
analyzing comprehensive ecological networks in microbiome studies. It is implemented in …

Microbial interactions for nutrient acquisition in soil: miners, scavengers, and carriers

T Cao, Y Luo, M Shi, X Tian, Y Kuzyakov - Soil Biology and Biochemistry, 2023 - Elsevier
Microbial interactions in soil are hidden, as they occur stealthily in a 'dark box'. This greatly
limits our understanding of microbial functions. Here, soil microorganisms were classified …

Challenges in upscaling laboratory studies to ecosystems in soil microbiology research

J Chen, Y Zhang, Y Kuzyakov, D Wang… - Global Change …, 2023 - Wiley Online Library
Soil microbiology has entered into the big data era, but the challenges in bridging laboratory‐
, field‐, and model‐based studies of ecosystem functions still remain. Indeed, the limitation …

Hi-C metagenome sequencing reveals soil phage–host interactions

R Wu, MR Davison, WC Nelson, ML Smith… - Nature …, 2023 - nature.com
Bacteriophages are abundant in soils. However, the majority are uncharacterized, and their
hosts are unknown. Here, we apply high-throughput chromosome conformation capture (Hi …

Bioengineered microbial strains for detoxification of toxic environmental pollutants

Q Maqsood, A Sumrin, R Waseem, M Hussain… - Environmental …, 2023 - Elsevier
Industrialization and other anthropogenic human activities pose significant environmental
risks. As a result of the hazardous pollution, numerous living organisms may suffer from …

Marine ecosystem shifts with deglacial sea-ice loss inferred from ancient DNA shotgun sequencing

HH Zimmermann, KR Stoof-Leichsenring… - Nature …, 2023 - nature.com
Sea ice is a key factor for the functioning and services provided by polar marine ecosystems.
However, ecosystem responses to sea-ice loss are largely unknown because time-series …

Bifidobacterium lactis Probio-M8 improves bone metabolism in patients with postmenopausal osteoporosis, possibly by modulating the gut microbiota

F Zhao, Z Guo, LY Kwok, Z Zhao, K Wang, Y Li… - European Journal of …, 2023 - Springer
Purpose Postmenopausal osteoporosis (PMO) is usually managed by conventional drug
treatment. However, prolonged use of these drugs cause side effects. Gut microbiota may be …

Microbial habitat specificity largely affects microbial co-occurrence patterns and functional profiles in wetland soils

C Liu, X Li, FRP Mansoldo, J An, Y Kou, X Zhang… - Geoderma, 2022 - Elsevier
Microbial species have different niche breadth, leading to distinct habitat ranges. Specialists
have narrow niche breadth and high habitat specificity in comparison with the generalists …