Diversification of Escherichia coli genomes: are bacteriophages the major contributors?

M Ohnishi, K Kurokawa, T Hayashi - Trends in microbiology, 2001 - cell.com
Determination of the genome sequence of enterohemorrhagic Escherichia coli O157 Sakai
and genomic comparison with the laboratory strain K-12 has revealed that the two strains …

Genome sequence of enterohaemorrhagic Escherichia coli O157:H7

NT Perna, G Plunkett III, V Burland, B Mau, JD Glasner… - Nature, 2001 - nature.com
The bacterium Escherichia coli O157: H7 is a worldwide threat to public health and has
been implicated in many outbreaks of haemorrhagic colitis, some of which included fatalities …

Complete Genome Sequence of Enterohemorrhagic Eschelichia coli O157:H7 and Genomic Comparison with a Laboratory Strain K-12

T Hayashi, K Makino, M Ohnishi, K Kurokawa… - DNA …, 2001 - academic.oup.com
Escherichia coli O157: H7 is a major food-borne infectious pathogen that causes diarrhea,
hemorrhagic colitis, and hemolytic uremic syndrome. Here we report the complete …

Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

VR Iyer, CE Horak, CS Scafe, D Botstein, M Snyder… - Nature, 2001 - nature.com
Proteins interact with genomic DNA to bring the genome to life; and these interactions also
define many functional features of the genome. SBF and MBF are sequence-specific …

Causes for the intriguing presence of tRNAs in phages

M Bailly-Bechet, M Vergassola, E Rocha - Genome research, 2007 - genome.cshlp.org
Phages have highly compact genomes with sizes reflecting their capacity to exploit the host
resources. Here, we investigate the reasons for tRNAs being the only translation-associated …

Comparative Genomics of Salmonellaenterica Serovar Typhi Strains Ty2 and CT18

W Deng, SR Liou, G Plunkett III, GF Mayhew… - Journal of …, 2003 - Am Soc Microbiol
ABSTRACT We present the 4.8-Mb complete genome sequence of Salmonella enterica
serovar Typhi strain Ty2, a human-specific pathogen causing typhoid fever. A comparison …

The Whole-genome Sequencing of the Obligate Intracellular Bacterium Orientia tsutsugamushi Revealed Massive Gene Amplification During Reductive Genome …

K Nakayama, A Yamashita, K Kurokawa… - DNA …, 2008 - academic.oup.com
Scrub typhus ('Tsutsugamushi'disease in Japanese) is a mite-borne infectious disease. The
causative agent is Orientia tsutsugamushi, an obligate intracellular bacterium belonging to …

Mining of thousands of prokaryotic genomes reveals high abundance of prophages with a strictly narrow host range

G López-Leal, LC Camelo-Valera… - Msystems, 2022 - Am Soc Microbiol
Phages and prophages are one of the principal modulators of microbial populations.
However, much of their diversity is still poorly understood. Here, we extracted 33,624 …

Phylogenetic diversity and similarity of active sites of Shiga toxin (Stx) in Shiga toxin-producing Escherichia coli (STEC) isolates from humans and animals

H Asakura, SI Makino, H Kobori, M Watarai… - Epidemiology & …, 2001 - cambridge.org
Nucleotide sequences of Shiga toxin (Stx) genes in STEC from various origins were
determined and characterized by phylogenetic analysis based on Shiga toxin (Stx) with …

Public health value of next-generation DNA sequencing of enterohemorrhagic Escherichia coli isolates from an outbreak

AP Underwood, T Dallman, NR Thomson… - Journal of clinical …, 2013 - Am Soc Microbiol
In 2009, an outbreak of enterohemorrhagic Escherichia coli (EHEC) on an open farm
infected 93 persons, and approximately 22% of these individuals developed hemolytic …