Genetic drift, selection and the evolution of the mutation rate

M Lynch, MS Ackerman, JF Gout, H Long… - Nature Reviews …, 2016 - nature.com
As one of the few cellular traits that can be quantified across the tree of life, DNA-replication
fidelity provides an excellent platform for understanding fundamental evolutionary …

[HTML][HTML] Chromatin remodeling at DNA double-strand breaks

BD Price, AD D'Andrea - Cell, 2013 - cell.com
DNA double-strand breaks (DSBs) can arise from multiple sources, including exposure to
ionizing radiation. The repair of DSBs involves both posttranslational modification of …

[HTML][HTML] Mutation bias reflects natural selection in Arabidopsis thaliana

JG Monroe, T Srikant, P Carbonell-Bejerano, C Becker… - Nature, 2022 - nature.com
Since the first half of the twentieth century, evolutionary theory has been dominated by the
idea that mutations occur randomly with respect to their consequences. Here we test this …

[HTML][HTML] Epigenetic modifications affect the rate of spontaneous mutations in a pathogenic fungus

M Habig, C Lorrain, A Feurtey, J Komluski… - Nature …, 2021 - nature.com
Mutations are the source of genetic variation and the substrate for evolution. Genome-wide
mutation rates appear to be affected by selection and are probably adaptive. Mutation rates …

[HTML][HTML] A high-resolution map of human enhancer RNA loci characterizes super-enhancer activities in cancer

H Chen, H Liang - Cancer cell, 2020 - cell.com
Although enhancers play critical roles in cancer, quantifying enhancer activities in clinical
samples remains challenging, especially for super-enhancers. Enhancer activities can be …

[HTML][HTML] Local determinants of the mutational landscape of the human genome

A Gonzalez-Perez, R Sabarinathan, N Lopez-Bigas - Cell, 2019 - cell.com
Large-scale chromatin features, such as replication time and accessibility influence the rate
of somatic and germline mutations at the megabase scale. This article reviews how local …

[HTML][HTML] Bursty gene expression in the intact mammalian liver

KB Halpern, S Tanami, S Landen, M Chapal, L Szlak… - Molecular cell, 2015 - cell.com
Bursts of nascent mRNA have been shown to lead to substantial cell-cell variation in
unicellular organisms, facilitating diverse responses to environmental challenges. It is …

The effects of chromatin organization on variation in mutation rates in the genome

KD Makova, RC Hardison - Nature Reviews Genetics, 2015 - nature.com
The variation in local rates of mutations can affect both the evolution of genes and their
function in normal and cancer cells. Deciphering the molecular determinants of this variation …

The divergence of mutation rates and spectra across the Tree of Life

M Lynch, F Ali, T Lin, Y Wang, J Ni, H Long - EMBO reports, 2023 - embopress.org
Owing to advances in genome sequencing, genome stability has become one of the most
scrutinized cellular traits across the Tree of Life. Despite its centrality to all things biological …

[HTML][HTML] Strong Purifying Selection at Synonymous Sites in D. melanogaster

DS Lawrie, PW Messer, R Hershberg, DA Petrov - PLoS genetics, 2013 - journals.plos.org
Synonymous sites are generally assumed to be subject to weak selective constraint. For this
reason, they are often neglected as a possible source of important functional variation. We …