Principles and challenges of modeling temporal and spatial omics data

B Velten, O Stegle - Nature Methods, 2023 - nature.com
Studies with temporal or spatial resolution are crucial to understand the molecular dynamics
and spatial dependencies underlying a biological process or system. With advances in high …

Early brain activity: translations between bedside and laboratory

HJ Luhmann, PO Kanold, Z Molnár… - Progress in neurobiology, 2022 - Elsevier
Neural activity is both a driver of brain development and a readout of developmental
processes. Changes in neuronal activity are therefore both the cause and consequence of …

Alternative splicing during mammalian organ development

PV Mazin, P Khaitovich, M Cardoso-Moreira… - Nature …, 2021 - nature.com
Alternative splicing (AS) is pervasive in mammalian genomes, yet cross-species
comparisons have been largely restricted to adult tissues and the functionality of most AS …

Sex-biased gene expression across mammalian organ development and evolution

L Rodríguez-Montes, S Ovchinnikova, X Yuan, T Studer… - Science, 2023 - science.org
Sexually dimorphic traits are common among mammals and are specified during
development through the deployment of sex-specific genetic programs. Because little is …

[HTML][HTML] Cellular development and evolution of the mammalian cerebellum

M Sepp, K Leiss, F Murat, K Okonechnikov, P Joshi… - Nature, 2024 - nature.com
The expansion of the neocortex, a hallmark of mammalian evolution,, was accompanied by
an increase in cerebellar neuron numbers. However, little is known about the evolution of …

Cell environment shapes TDP-43 function with implications in neuronal and muscle disease

U Šušnjar, N Škrabar, AL Brown, Y Abbassi… - Communications …, 2022 - nature.com
Abstract TDP-43 (TAR DNA-binding protein 43) aggregation and redistribution are
recognised as a hallmark of amyotrophic lateral sclerosis and frontotemporal dementia. As …

Regulators of cardiac fibroblast cell state

R Bretherton, D Bugg, E Olszewski, J Davis - Matrix Biology, 2020 - Elsevier
Fibroblasts are the primary regulator of cardiac extracellular matrix (ECM). In response to
disease stimuli cardiac fibroblasts undergo cell state transitions to a myofibroblast …

'Channeling'therapeutic discovery for epileptic encephalopathy through iPSC technologies

D Simkin, C Ambrosi, KA Marshall, LA Williams… - Trends in …, 2022 - cell.com
Induced pluripotent stem cell (iPSC) and gene editing technologies have revolutionized the
field of in vitro disease modeling, granting us access to disease-pertinent human cells of the …

Computational identification of disease models through cross-species phenotype comparison

P Cacheiro, D Pava, H Parkinson… - Disease Models & …, 2024 - journals.biologists.com
The use of standardised phenotyping screens to identify abnormal phenotypes in mouse
knockouts, together with the use of ontologies to describe such phenotypic features, allows …

Association between polygenic risk for Alzheimer's disease and brain structure in children and adults

XY He, BS Wu, K Kuo, W Zhang, Q Ma… - Alzheimer's Research & …, 2023 - Springer
Background The correlations between genetic risk for Alzheimer's disease (AD) with
comprehensive brain regions at a regional scale are still not well understood. We aim to …