Strategies for achieving high-level expression of genes in Escherichia coli

SC Makrides - Microbiological reviews, 1996 - Am Soc Microbiol
Progress in our understanding of several biological processes promises to broaden the
usefulness of Escherichia coli as a tool for gene expression. There is an expanding choice …

Selection on codon bias

R Hershberg, DA Petrov - Annual review of genetics, 2008 - annualreviews.org
In a wide variety of organisms, synonymous codons are used with different frequencies, a
phenomenon known as codon bias. Population genetic studies have shown that …

Synonymous codons: choose wisely for expression

CE Brule, EJ Grayhack - Trends in Genetics, 2017 - cell.com
The genetic code, which defines the amino acid sequence of a protein, also contains
information that influences the rate and efficiency of translation. Neither the mechanisms nor …

Acyl-CoA: diacylglycerol acyltransferase: molecular biology, biochemistry and biotechnology

Q Liu, RMP Siloto, R Lehner, SJ Stone… - Progress in lipid …, 2012 - Elsevier
Triacylglycerol (TG) is a storage lipid which serves as an energy reservoir and a source of
signalling molecules and substrates for membrane biogenesis. TG is essential for many …

[PDF][PDF] Analysis of codon usage

JF Peden - 2000 - Citeseer
The genetic code uses 64 codons to represent the 20 standard amino acids and the
translation termination signal. Each codon is recognised by a subset of a cell's transfer …

Taxonomy, biology, and periodontal aspects of Fusobacterium nucleatum

AI Bolstad, HB Jensen, V Bakken - Clinical microbiology reviews, 1996 - Am Soc Microbiol
The pathogenic potential of Fusobacterium nucleatum and its significance in the
development of periodontal diseases, as well as in infections in other organs, have gained …

Balanced codon usage optimizes eukaryotic translational efficiency

W Qian, JR Yang, NM Pearson, C Maclean… - PLoS genetics, 2012 - journals.plos.org
Cellular efficiency in protein translation is an important fitness determinant in rapidly growing
organisms. It is widely believed that synonymous codons are translated with unequal …

A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes

RD Knight, SJ Freeland, LF Landweber - Genome biology, 2001 - Springer
Background Correlations between genome composition (in terms of GC content) and usage
of particular codons and amino acids have been widely reported, but poorly explained. We …

[HTML][HTML] A role for tRNA modifications in genome structure and codon usage

EM Novoa, M Pavon-Eternod, T Pan, LR de Pouplana - Cell, 2012 - cell.com
Transfer RNA (tRNA) gene content is a differentiating feature of genomes that contributes to
the efficiency of the translational apparatus, but the principles shaping tRNA gene copy …

Variation in the strength of selected codon usage bias among bacteria

PM Sharp, E Bailes, RJ Grocock, JF Peden… - Nucleic acids …, 2005 - academic.oup.com
Among bacteria, many species have synonymous codon usage patterns that have been
influenced by natural selection for those codons that are translated more accurately and/or …