Ecological modelling approaches for predicting emergent properties in microbial communities

NI van den Berg, D Machado, S Santos… - Nature ecology & …, 2022 - nature.com
Recent studies have brought forward the critical role of emergent properties in shaping
microbial communities and the ecosystems of which they are a part. Emergent properties …

Trophic interactions and the drivers of microbial community assembly

M Gralka, R Szabo, R Stocker, OX Cordero - Current Biology, 2020 - cell.com
Despite numerous surveys of gene and species content in heterotrophic microbial
communities, such as those found in animal guts, oceans, or soils, it is still unclear whether …

Small changes in rhizosphere microbiome composition predict disease outcomes earlier than pathogen density variations

Y Gu, S Banerjee, F Dini-Andreote, Y Xu… - The ISME …, 2022 - academic.oup.com
Even in homogeneous conditions, plants facing a soilborne pathogen tend to show a binary
outcome with individuals either remaining fully healthy or developing severe to lethal …

Statistically learning the functional landscape of microbial communities

A Skwara, K Gowda, M Yousef… - Nature ecology & …, 2023 - nature.com
Microbial consortia exhibit complex functional properties in contexts ranging from soils to
bioreactors to human hosts. Understanding how community composition determines …

Metabolic interaction models recapitulate leaf microbiota ecology

M Schäfer, AR Pacheco, R Künzler, M Bortfeld-Miller… - Science, 2023 - science.org
Resource allocation affects the structure of microbiomes, including those associated with
living hosts. Understanding the degree to which this dependency determines interspecies …

From microbiome composition to functional engineering, one step at a time

SD Burz, S Causevic, A Dal Co… - Microbiology and …, 2023 - Am Soc Microbiol
Communities of microorganisms (microbiota) are present in all habitats on Earth and are
relevant for agriculture, health, and climate. Deciphering the mechanisms that determine …

[HTML][HTML] Quorum sensing-mediated microbial interactions: Mechanisms, applications, challenges and perspectives

X Zeng, Y Zou, J Zheng, S Qiu, L Liu, C Wei - Microbiological Research, 2023 - Elsevier
Microbial community in natural or artificial environments playes critical roles in substance
cycles, products synthesis and species evolution. Although microbial community structures …

Properties of equilibria and glassy phases of the random lotka-volterra model with demographic noise

A Altieri, F Roy, C Cammarota, G Biroli - Physical Review Letters, 2021 - APS
We study a reference model in theoretical ecology, the disordered Lotka-Volterra model for
ecological communities, in the presence of finite demographic noise. Our theoretical …

This tree is on fire: a review on the ecology of Erwinia amylovora, the causal agent of fire blight disease

A Pedroncelli, G Puopolo - Journal of Plant Pathology, 2024 - Springer
Fire blight represents a great threat to apple and pear production worldwide. The ability of its
causal agent, Erwinia amylovora, to spread rapidly in the host plants makes this devastating …

Modulation of antibiotic effects on microbial communities by resource competition

DP Newton, PY Ho, KC Huang - Nature Communications, 2023 - nature.com
Antibiotic treatment significantly impacts the human gut microbiota, but quantitative
understanding of how antibiotics affect community diversity is lacking. Here, we build on …