TBGA: a large-scale gene-disease association dataset for biomedical relation extraction

S Marchesin, G Silvello - BMC bioinformatics, 2022 - Springer
Background Databases are fundamental to advance biomedical science. However, most of
them are populated and updated with a great deal of human effort. Biomedical Relation …

Plug-and-play knowledge injection for pre-trained language models

Z Zhang, Z Zeng, Y Lin, H Wang, D Ye, C Xiao… - arXiv preprint arXiv …, 2023 - arxiv.org
Injecting external knowledge can improve the performance of pre-trained language models
(PLMs) on various downstream NLP tasks. However, massive retraining is required to …

[HTML][HTML] Multimodal learning on graphs for disease relation extraction

Y Lin, K Lu, S Yu, T Cai, M Zitnik - Journal of Biomedical Informatics, 2023 - Elsevier
Disease knowledge graphs have emerged as a powerful tool for artificial intelligence to
connect, organize, and access diverse information about diseases. Relations between …

PARE: A simple and strong baseline for monolingual and multilingual distantly supervised relation extraction

V Rathore, K Badola, P Singla - arXiv preprint arXiv:2110.07415, 2021 - arxiv.org
Neural models for distantly supervised relation extraction (DS-RE) encode each sentence in
an entity-pair bag separately. These are then aggregated for bag-level relation prediction …

Enhancing targeted minority class prediction in sentence-level relation extraction

HR Baek, YS Choi - Sensors, 2022 - mdpi.com
Sentence-level relation extraction (RE) has a highly imbalanced data distribution that about
80% of data are labeled as negative, ie, no relation; and there exist minority classes (MC) …

Interaction-and-response network for distantly supervised relation extraction

W Song, W Gu, F Zhu, SC Park - IEEE Transactions on Neural …, 2023 - ieeexplore.ieee.org
Distantly supervised relation extraction (DSRE) aims to identify semantic relations from
massive plain texts. A broad range of the prior research has leveraged a series of selective …

Cross-stitching text and knowledge graph encoders for distantly supervised relation extraction

Q Dai, B Heinzerling, K Inui - arXiv preprint arXiv:2211.01432, 2022 - arxiv.org
Bi-encoder architectures for distantly-supervised relation extraction are designed to make
use of the complementary information found in text and knowledge graphs (KG). However …

CETA: A consensus enhanced training approach for denoising in distantly supervised relation extraction

R Liu, S Mo, J Niu, S Fan - … of the 29th International Conference on …, 2022 - aclanthology.org
Distantly supervised relation extraction aims to extract relational facts from texts but suffers
from noisy instances. Existing methods usually select reliable sentences that rely on …

Analysis of Digital Information in Storage Devices Using Supervised and Unsupervised Natural Language Processing Techniques

LA Martínez Hernández, AL Sandoval Orozco… - Future Internet, 2023 - mdpi.com
Due to the advancement of technology, cybercrime has increased considerably, making
digital forensics essential for any organisation. One of the most critical challenges is to …

Meddistant19: towards an accurate benchmark for broad-coverage biomedical relation extraction

S Amin, P Minervini, D Chang, P Stenetorp… - arXiv preprint arXiv …, 2022 - arxiv.org
Relation extraction in the biomedical domain is challenging due to the lack of labeled data
and high annotation costs, needing domain experts. Distant supervision is commonly used …