The genomics of plant satellite DNA

MA Garrido-Ramos - Satellite DNAs in Physiology and Evolution, 2021 - Springer
The twenty-first century began with a certain indifference to the research of satellite DNA
(satDNA). Neither genome sequencing projects were able to accurately encompass the …

Genome sequencing of fiber flax cultivar atlant using oxford nanopore and illumina platforms

AA Dmitriev, EN Pushkova, RO Novakovskiy… - Frontiers in …, 2021 - frontiersin.org
Flax (Linum usitatissimum L.) has been grown for seeds and fiber since ancient times
(Vaisey-Genser and Morris, 2003). Fiber flax is taller than linseed and has branches only in …

Reconstructing phylogenetic relationships based on repeat sequence similarities

D Vitales, S Garcia, S Dodsworth - Molecular Phylogenetics and Evolution, 2020 - Elsevier
A recent phylogenetic method based on genome-wide abundance of different repeat types
proved to be useful in reconstructing the evolutionary history of several plant and animal …

Evolution of Tandem Repeats Is Mirroring Post-polyploid Cladogenesis in Heliophila (Brassicaceae)

M Dogan, M Pouch, T Mandáková… - Frontiers in Plant …, 2021 - frontiersin.org
The unigeneric tribe Heliophileae encompassing more than 100 Heliophila species is
morphologically the most diverse Brassicaceae lineage. The tribe is endemic to southern …

Comparative repeatome analysis reveals new evidence on genome evolution in wild diploid Arachis (Fabaceae) species

SS Samoluk, M Vaio, AM Ortíz, LMI Chalup, G Robledo… - Planta, 2022 - Springer
Main conclusion Opposing changes in the abundance of satellite DNA and long terminal
repeat (LTR) retroelements are the main contributors to the variation in genome size and …

Development and Complex Application of Methods for the Identification of Mutations in the FAD3A and FAD3B Genes Resulting in the Reduced Content of Linolenic …

LV Povkhova, EN Pushkova, TA Rozhmina… - Plants, 2022 - mdpi.com
Flax is grown worldwide for seed and fiber production. Linseed varieties differ in their oil
composition and are used in pharmaceutical, food, feed, and industrial production. The field …

Aiming off the target: recycling target capture sequencing reads for investigating repetitive DNA

L Costa, A Marques, C Buddenhagen… - Annals of …, 2021 - academic.oup.com
Abstract Background and Aims With the advance of high-throughput sequencing, reduced-
representation methods such as target capture sequencing (TCS) emerged as cost-efficient …

Power and Weakness of Repetition – Evaluating the Phylogenetic Signal From Repeatomes in the Family Rosaceae With Two Case Studies From Genera Prone to Polyploidy and …

V Herklotz, A Kovařík, V Wissemann… - Frontiers in Plant …, 2021 - frontiersin.org
Plant genomes consist, to a considerable extent, of non-coding repetitive DNA. Several
studies showed that phylogenetic signals can be extracted from such repeatome data by …

Диалектика видов: от исходного единообразия, через максимально возможное разнообразие к конечному единообразию

АВ Родионов, ВС Шнеер, АА Гнутиков… - Ботанический …, 2020 - elibrary.ru
В статье показано, что данные сравнительной геномики раскрыли генетические
механизмы явлений и процессов, наблюдаемых на разных стадиях видообразования у …

Chromosome-scale Genome Assembly of Lewis Flax (Linum lewisii Pursh.)

PA Innes, BC Smart, JAM Barham, BS Hulke, NC Kane - bioRxiv, 2023 - biorxiv.org
Linum lewisii, a perennial blue flax native to North America, holds potential as a sustainable
perennial crop for oilseed production due to its ecological adaptability, upright harvestable …