Alternative splicing as a source of phenotypic diversity

CJ Wright, CWJ Smith, CD Jiggins - Nature Reviews Genetics, 2022 - nature.com
A major goal of evolutionary genetics is to understand the genetic processes that give rise to
phenotypic diversity in multicellular organisms. Alternative splicing generates multiple …

The epitranscriptome beyond m6A

D Wiener, S Schwartz - Nature Reviews Genetics, 2021 - nature.com
Following its transcription, RNA can be modified by> 170 chemically distinct types of
modifications—the epitranscriptome. In recent years, there have been substantial efforts to …

Global impact of unproductive splicing on human gene expression

B Fair, CF Buen Abad Najar, J Zhao, S Lozano… - Nature Genetics, 2024 - nature.com
Alternative splicing (AS) in human genes is widely viewed as a mechanism for enhancing
proteomic diversity. AS can also impact gene expression levels without increasing protein …

CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

M Pertea, A Shumate, G Pertea, A Varabyou… - Genome biology, 2018 - Springer
We assembled the sequences from deep RNA sequencing experiments by the Genotype-
Tissue Expression (GTEx) project, to create a new catalog of human genes and transcripts …

Alternative splicing during mammalian organ development

PV Mazin, P Khaitovich, M Cardoso-Moreira… - Nature …, 2021 - nature.com
Alternative splicing (AS) is pervasive in mammalian genomes, yet cross-species
comparisons have been largely restricted to adult tissues and the functionality of most AS …

[HTML][HTML] Mammalian circular RNAs result largely from splicing errors

C Xu, J Zhang - Cell reports, 2021 - cell.com
Ubiquitous in eukaryotes, circular RNAs (circRNAs) comprise a large class of mostly non-
coding RNAs produced by back-splicing. Although some circRNAs have demonstrated …

Re-appraising the evidence for the source, regulation and function of p53-family isoforms

I López, IL Valdivia, B Vojtesek… - Nucleic Acids …, 2024 - academic.oup.com
The p53 family of proteins evolved from a common ancestor into three separate genes
encoding proteins that act as transcription factors with distinct cellular roles. Isoforms of each …

Physical activity associated proteomics of skeletal muscle: being physically active in daily life may protect skeletal muscle from aging

C Ubaida-Mohien, M Gonzalez-Freire… - Frontiers in …, 2019 - frontiersin.org
Muscle strength declines with aging and increasing physical activity is the only intervention
known to attenuate this decline. In order to adequately investigate both preventive and …

Stop-codon read-through arises largely from molecular errors and is generally nonadaptive

C Li, J Zhang - PLoS genetics, 2019 - journals.plos.org
Stop-codon read-through refers to the phenomenon that a ribosome goes past the stop
codon and continues translating into the otherwise untranslated region (UTR) of a transcript …

Defining the genetic and evolutionary architecture of alternative splicing in response to infection

M Rotival, H Quach, L Quintana-Murci - Nature communications, 2019 - nature.com
Host and environmental factors contribute to variation in human immune responses, yet the
genetic and evolutionary drivers of alternative splicing in response to infection remain …