The role of DNA methylation in personalized medicine for immune-related diseases

MK Gupta, H Peng, Y Li, CJ Xu - Pharmacology & Therapeutics, 2023 - Elsevier
Epigenetics functions as a bridge between host genetic & environmental factors, aiding in
human health and diseases. Many immune-related diseases, including infectious and …

[HTML][HTML] Systems analysis of human innate immunity in COVID-19

S Müller, JL Schultze - Seminars in immunology, 2023 - Elsevier
Recent developments in sequencing technologies, the computer and data sciences, as well
as increasingly high-throughput immunological measurements have made it possible to …

Polygenic regression uncovers trait-relevant cellular contexts through pathway activation transformation of single-cell RNA sequencing data

Y Ma, C Deng, Y Zhou, Y Zhang, F Qiu, D Jiang… - Cell Genomics, 2023 - cell.com
Advances in single-cell RNA sequencing (scRNA-seq) techniques have accelerated
functional interpretation of disease-associated variants discovered from genome-wide …

Integration of human organoids single‐cell transcriptomic profiles and human genetics repurposes critical cell type‐specific drug targets for severe COVID‐19

Y Ma, Y Zhou, D Jiang, W Dai, J Li, C Deng… - Cell …, 2024 - Wiley Online Library
Human organoids recapitulate the cell type diversity and function of their primary organs
holding tremendous potentials for basic and translational research. Advances in single‐cell …

MOCHA's advanced statistical modeling of scATAC-seq data enables functional genomic inference in large human cohorts

S Rachid Zaim, MP Pebworth, I McGrath… - Nature …, 2024 - nature.com
Single-cell assay for transposase-accessible chromatin using sequencing (scATAC-seq) is
being increasingly used to study gene regulation. However, major analytical gaps limit its …

Reduced monocyte proportions and responsiveness in convalescent COVID-19 patients

EV Ravkov, ESCP Williams, M Elgort… - Frontiers in …, 2024 - frontiersin.org
Introduction The clinical manifestations of acute severe acute respiratory syndrome
coronavirus type 2 (SARS-CoV-2) infection and coronavirus disease 2019 (COVID-19) …

Remodeling of the chromatin landscape in peripheral blood cells in patients with severe Delta COVID-19

VE Akimov, DI Tychinin, OA Antonova… - Frontiers in …, 2024 - frontiersin.org
COVID-19 is characterized by systemic pro-inflammatory shifts with the development of
serious alterations in the functioning of the immune system. Investigations of the gene …

Differences in immune responses in individuals of Indian and european origin: relevance for the COVID-19 pandemic

B Geckin, M Zoodsma, G Kilic, PA Debisarun… - Microbiology …, 2023 - Am Soc Microbiol
During the coronavirus disease 2019 (COVID-19) pandemic, large differences in
susceptibility and mortality due to severe acute respiratory syndrome coronavirus 2 (SARS …

Epigenetic and transcriptional responses in circulating leukocytes are associated with future decompensation during SARS-CoV-2 infection

MT McClain, I Zhbannikov, LL Satterwhite, R Henao… - Iscience, 2024 - cell.com
To elucidate host response elements that define impending decompensation during SARS-
CoV-2 infection, we enrolled subjects hospitalized with COVID-19 who were matched for …

MotifbreakR v2: extended capability and database integration

SG Coetzee, DJ Hazelett - ArXiv, 2024 - pmc.ncbi.nlm.nih.gov
MotifbreakR is a software tool that scans genetic variants against position weight matrices of
transcription factors (TF) to determine the potential for the disruption of TF binding at the site …