An expanded lexicon for the ubiquitin code

I Dikic, BA Schulman - Nature reviews Molecular cell biology, 2023 - nature.com
Our understanding of the ubiquitin code has greatly evolved from conventional E1, E2 and
E3 enzymes that modify Lys residues on specific substrates with a single type of ubiquitin …

ER chaperone functions during normal and stress conditions

Y Ma, LM Hendershot - Journal of chemical neuroanatomy, 2004 - Elsevier
Nearly all resident proteins of the organelles along the secretory pathway, as well as
proteins that are expressed at the cell surface or secreted from the cell, are first co …

[HTML][HTML] Approaches to identify inhibitors of melanin biosynthesis via the quality control of tyrosinase

H Ando, H Kondoh, M Ichihashi, VJ Hearing - Journal of Investigative …, 2007 - Elsevier
Tyrosinase, a copper-containing glycoprotein, is the rate-limiting enzyme critical for melanin
biosynthesis in specialized organelles termed melanosomes that are produced only by …

A stress-responsive system for mitochondrial protein degradation

JM Heo, N Livnat-Levanon, EB Taylor, KT Jones… - Molecular cell, 2010 - cell.com
We show that Ydr049 (renamed VCP/Cdc48-associated mitochondrial stress-responsive—
Vms1), a member of an unstudied pan-eukaryotic protein family, translocates from the …

[HTML][HTML] Direct binding of ubiquitin conjugates by the mammalian p97 adaptor complexes, p47 and Ufd1–Npl4

HH Meyer, Y Wang, G Warren - The EMBO journal, 2002 - embopress.org
The multiple functions of the p97/Cdc48p ATPase can be explained largely by adaptors that
link its activity to different cellular pathways, but how these adaptors recognize different …

Delivery of ubiquitinated substrates to protein-unfolding machines

S Elsasser, D Finley - Nature cell biology, 2005 - nature.com
Recent work has shown that ubiquitination leads to recognition of target proteins by diverse
ubiquitin receptors. One family of receptors delivers the ubiquitinated proteins to the …

A comprehensive analysis of hydrogen peroxide-induced gene expression in tobacco

S Vandenabeele, K Van Der Kelen… - Proceedings of the …, 2003 - National Acad Sciences
Hydrogen peroxide plays a central role in launching the defense response during stress in
plants. To establish a molecular profile provoked by a sustained increase in hydrogen …

[HTML][HTML] Cooperation of molecular chaperones with the ubiquitin/proteasome system

C Esser, S Alberti, J Höhfeld - … et Biophysica Acta (BBA)-Molecular Cell …, 2004 - Elsevier
Molecular chaperones and energy-dependent proteases have long been viewed as
opposing forces that control protein biogenesis. Molecular chaperones are specialized in …

Histone deacetylase 6 binds polyubiquitin through its zinc finger (PAZ domain) and copurifies with deubiquitinating enzymes

SS Hook, A Orian, SM Cowley… - Proceedings of the …, 2002 - National Acad Sciences
Histone deacetylases (HDACs) are thought to function as critical mediators of transcriptional
repression. However, the physiological targets and posttranslational modifications of the …

Inhibition of p97-dependent protein degradation by Eeyarestatin I

Q Wang, L Li, Y Ye - Journal of Biological Chemistry, 2008 - ASBMB
Elimination of misfolded proteins from the endoplasmic reticulum (ER) by ER-associated
degradation involves substrate retrotranslocation from the ER lumen into the cytosol for …