The traditional computational modeling of protein structure, dynamics, and interactions
remains difficult for many protein systems. It is mostly due to the size of protein …

Highlights•Search strategies of current protein–protein docking algorithms were
reviewed.•Challenges and future directions of established approaches were discussed.•Post …

High‐resolution experimental structural determination of protein–protein interactions has led
to valuable mechanistic insights, yet due to the massive number of interactions and …

Protein complexes are involved in many important processes in living cells. To understand
the mechanisms of these processes, it is necessary to solve the 3D structures of the protein …

Protein–protein docking is an important computational tool for predicting protein–protein
interactions. With the rapid development of proteomics projects, more and more …

Computational docking methods can provide structural models of protein–protein
complexes, but protein backbone flexibility upon association often thwarts accurate …

Protein-protein docking is a useful tool for modeling the structures of protein complexes that
have yet to be experimentally determined. Understanding the structures of protein …

Motivation Computational prediction of protein–protein complex structure by docking can
provide structural and mechanistic insights for protein interactions of biomedical interest …

Protein interactions define the homeostatic state of the cell. Our ability to understand these
interactions and their role in both health and disease is tied to our knowledge of the 3D …

Fundamental processes in living cells are largely controlled by macromolecular interactions
and among them, protein protein interactions (PPIs) have a critical role while their …