Lamina-associated domains: links with chromosome architecture, heterochromatin, and gene repression

B Van Steensel, AS Belmont - Cell, 2017 - cell.com
In metazoan cell nuclei, hundreds of large chromatin domains are in close contact with the
nuclear lamina. Such lamina-associated domains (LADs) are thought to help organize …

Epigenetic modulators, modifiers and mediators in cancer aetiology and progression

AP Feinberg, MA Koldobskiy, A Göndör - Nature Reviews Genetics, 2016 - nature.com
This year is the tenth anniversary of the publication in this journal of a model suggesting the
existence of'tumour progenitor genes'. These genes are epigenetically disrupted at the …

Integrated spatial genomics reveals global architecture of single nuclei

Y Takei, J Yun, S Zheng, N Ollikainen, N Pierson… - Nature, 2021 - nature.com
Identifying the relationships between chromosome structures, nuclear bodies, chromatin
states and gene expression is an overarching goal of nuclear-organization studies …

Higher-order inter-chromosomal hubs shape 3D genome organization in the nucleus

SA Quinodoz, N Ollikainen, B Tabak, A Palla… - Cell, 2018 - cell.com
Eukaryotic genomes are packaged into a 3-dimensional structure in the nucleus. Current
methods for studying genome-wide structure are based on proximity ligation. However, this …

Two independent modes of chromatin organization revealed by cohesin removal

W Schwarzer, N Abdennur, A Goloborodko… - Nature, 2017 - nature.com
Imaging and chromosome conformation capture studies have revealed several layers of
chromosome organization, including segregation into megabase-sized active and inactive …

3D structures of individual mammalian genomes studied by single-cell Hi-C

TJ Stevens, D Lando, S Basu, LP Atkinson, Y Cao… - Nature, 2017 - nature.com
The folding of genomic DNA from the beads-on-a-string-like structure of nucleosomes into
higher-order assemblies is crucially linked to nuclear processes. Here we calculate 3D …

[HTML][HTML] Integrative analysis of 111 reference human epigenomes

A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen… - Nature, 2015 - nature.com
The reference human genome sequence set the stage for studies of genetic variation and its
association with human disease, but epigenomic studies lack a similar reference. To …

Nuclear chromosome locations dictate segregation error frequencies

SJ Klaasen, MA Truong, RH van Jaarsveld, I Koprivec… - Nature, 2022 - nature.com
Chromosome segregation errors during cell divisions generate aneuploidies and
micronuclei, which can undergo extensive chromosomal rearrangements such as …

Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer

KC Akdemir, VT Le, S Chandran, Y Li, RG Verhaak… - Nature …, 2020 - nature.com
Chromatin is folded into successive layers to organize linear DNA. Genes within the same
topologically associating domains (TADs) demonstrate similar expression and histone …

Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler

Y Chen, Y Zhang, Y Wang, L Zhang… - Journal of Cell …, 2018 - rupress.org
While nuclear compartmentalization is an essential feature of three-dimensional genome
organization, no genomic method exists for measuring chromosome distances to defined …