Bioinformatics of metalloproteins and metalloproteomes

Y Zhang, J Zheng - Molecules, 2020 - mdpi.com
Trace metals are inorganic elements that are required for all organisms in very low
quantities. They serve as cofactors and activators of metalloproteins involved in a variety of …

Bioinformatics of selenoproteins

D Santesmasses, M Mariotti… - Antioxidants & Redox …, 2020 - liebertpub.com
Significance: Bioinformatics has brought important insights into the field of selenium
research. The progress made in the development of computational tools in the last two …

Selenium metabolism and selenoproteins in prokaryotes: a bioinformatics perspective

Y Zhang, J Jin, B Huang, H Ying, J He, L Jiang - Biomolecules, 2022 - mdpi.com
Selenium (Se) is an important trace element that mainly occurs in the form of selenocysteine
in selected proteins. In prokaryotes, Se is also required for the synthesis of selenouridine …

Phylogenomics identifies an ancestral burst of gene duplications predating the diversification of Aphidomorpha

I Julca, M Marcet-Houben, F Cruz… - Molecular Biology …, 2020 - academic.oup.com
Aphids (Aphidoidea) are a diverse group of hemipteran insects that feed on plant phloem
sap. A common finding in studies of aphid genomes is the presence of a large number of …

Comparative genomics and metagenomics of the metallomes

Y Zhang, H Ying, Y Xu - Metallomics, 2019 - academic.oup.com
Biological trace metals are needed by all living organisms in very small quantities. They play
important roles in a variety of key cellular processes, resulting in a varying degree of …

[HTML][HTML] The Catalan initiative for the Earth BioGenome Project: contributing local data to global biodiversity genomics

M Corominas, T Marquès-Bonet… - NAR Genomics and …, 2024 - academic.oup.com
Abstract The Catalan Initiative for the Earth BioGenome Project (CBP) is an EBP-affiliated
project network aimed at sequencing the genome of the> 40 000 eukaryotic species …

Asgard archaea modulate potential methanogenesis substrates in wetland soil

LE Valentin-Alvarado, KE Appler, V De Anda… - bioRxiv, 2023 - biorxiv.org
The roles of Asgard archaea in eukaryogenesis and marine biogeochemical cycles are well
studied, yet their contributions in soil ecosystems are unknown. Of particular interest are …

Phylogenomics provides new insights into gains and losses of selenoproteins among Archaeplastida

H Liang, T Wei, Y Xu, L Li, S Kumar Sahu… - International Journal of …, 2019 - mdpi.com
Selenoproteins that contain selenocysteine (Sec) are found in all kingdoms of life. Although
they constitute a small proportion of the proteome, selenoproteins play essential roles in …

Use of selenocysteine, the 21st amino acid, in the fungal kingdom

M Mariotti, G Salinas, T Gabaldón, VN Gladyshev - bioRxiv, 2018 - biorxiv.org
Selenoproteins are a diverse class of proteins containing selenocysteine (Sec), the 21st
amino acid, incorporated into proteins during translation through a unique recoding …

Vertical Profiles of Microbial Trace Element Utilization in Marine Environments

Y Xu, Q Liu, Y Zhang - 2021 - researchsquare.com
Background: Biological trace elements are used in small amounts but are required for all
living organisms. They are key components of many proteins and enzymes involved in …