DNA sequence evolution: the sounds of silence
Silent sites (positions that can undergo synonymous substitutions) in protein-coding genes
can illuminate two evolutionary processes. First, despite being silent, they may be subject to …
can illuminate two evolutionary processes. First, despite being silent, they may be subject to …
Codon usage in Caenorhabditis elegans : delineation of translational selection and mutational biases
M Stenico, AT Lloyd, PM Sharp - Nucleic acids research, 1994 - academic.oup.com
Synonymous codon usage varies considerably among Caenorhabditis elegans genes.
Multivariate statistical analyses reveal a single major trend among genes. At one end of the …
Multivariate statistical analyses reveal a single major trend among genes. At one end of the …
Evolution of codon usage in Zika virus genomes is host and vector specific
AM Butt, I Nasrullah, R Qamar… - Emerging microbes & …, 2016 - Taylor & Francis
The codon usage patterns of viruses reflect the evolutionary changes that allow them to
optimize their survival and adapt their fitness to the external environment and, most …
optimize their survival and adapt their fitness to the external environment and, most …
Genome-wide analysis of codon usage and influencing factors in chikungunya viruses
Chikungunya virus (CHIKV) is an arthropod-borne virus of the family Togaviridae that is
transmitted to humans by Aedes spp. mosquitoes. Its genome comprises a 12 kb single …
transmitted to humans by Aedes spp. mosquitoes. Its genome comprises a 12 kb single …
Synonymous codons influencing gene expression in organisms
S Mitra, SK Ray, R Banerjee - Research and Reports in …, 2016 - Taylor & Francis
Nowadays, it is beyond doubt that synonymous codons are not the same with respect to
expression of a gene. In favor of this, ribosome profiling experiments in vivo and in vitro have …
expression of a gene. In favor of this, ribosome profiling experiments in vivo and in vitro have …
Analysis of synonymous codon usage in SARS Coronavirus and other viruses in the Nidovirales
In this study, we calculated the codon usage bias in severe acute respiratory syndrome
Coronavirus (SARSCoV) and performed a comparative analysis of synonymous codon …
Coronavirus (SARSCoV) and performed a comparative analysis of synonymous codon …
Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution
Abstract Background The Marburg virus (MARV) has a negative-sense single-stranded RNA
genome, belongs to the family Filoviridae, and is responsible for several outbreaks of highly …
genome, belongs to the family Filoviridae, and is responsible for several outbreaks of highly …
Analysis of synonymous codon usage in H5N1 virus and other influenza A viruses
In this study, we calculated the codon usage bias in H5N1 virus and performed a
comparative analysis of synonymous codon usage patterns in H5N1 virus, five other …
comparative analysis of synonymous codon usage patterns in H5N1 virus, five other …
Synonymous Codon Usage in Lactococcus lactis: Mutational Bias Versus Translational Selection
SK Gupta, TK Bhattacharyya… - Journal of Biomolecular …, 2004 - Taylor & Francis
In this study codon usage bias of all experimentally known genes of Lactococcus lactis has
been analyzed. Since Lactococcus lactis is an AT rich organism, it is expected to occur A …
been analyzed. Since Lactococcus lactis is an AT rich organism, it is expected to occur A …
Evolutionary and genetic analysis of the VP2 gene of canine parvovirus
G Li, S Ji, X Zhai, Y Zhang, J Liu, M Zhu, J Zhou, S Su - BMC genomics, 2017 - Springer
Background Canine parvovirus (CPV) type 2 emerged in 1978 in the USA and quickly
spread among dog populations all over the world with high morbidity. Although CPV is a …
spread among dog populations all over the world with high morbidity. Although CPV is a …