Current applications and future perspective of CRISPR/Cas9 gene editing in cancer

SW Wang, C Gao, YM Zheng, L Yi, JC Lu, XY Huang… - Molecular cancer, 2022 - Springer
Clustered regularly interspaced short palindromic repeats (CRISPR) system provides
adaptive immunity against plasmids and phages in prokaryotes. This system inspires the …

Functions and consequences of AID/APOBEC-mediated DNA and RNA deamination

R Pecori, S Di Giorgio, J Paulo Lorenzo… - Nature Reviews …, 2022 - nature.com
The AID/APOBEC polynucleotide cytidine deaminases have historically been classified as
either DNA mutators or RNA editors based on their first identified nucleic acid substrate …

Mechanisms of APOBEC3 mutagenesis in human cancer cells

M Petljak, A Dananberg, K Chu, EN Bergstrom… - Nature, 2022 - nature.com
The APOBEC3 family of cytosine deaminases has been implicated in some of the most
prevalent mutational signatures in cancer,–. However, a causal link between endogenous …

Discovery of deaminase functions by structure-based protein clustering

J Huang, Q Lin, H Fei, Z He, H Xu, Y Li, K Qu, P Han… - Cell, 2023 - cell.com
The elucidation of protein function and its exploitation in bioengineering have greatly
advanced the life sciences. Protein mining efforts generally rely on amino acid sequences …

Base editing: precision chemistry on the genome and transcriptome of living cells

HA Rees, DR Liu - Nature reviews genetics, 2018 - nature.com
RNA-guided programmable nucleases from CRISPR systems generate precise breaks in
DNA or RNA at specified positions. In cells, this activity can lead to changes in DNA …

In vivo hypermutation and continuous evolution

RS Molina, G Rix, AA Mengiste, B Álvarez… - Nature Reviews …, 2022 - nature.com
Directed evolution has revolutionized biomolecular engineering by applying cycles of
mutation, amplification and selection to genes of interest (GOIs). However, classical directed …

Cytosine, but not adenine, base editors induce genome-wide off-target mutations in rice

S Jin, Y Zong, Q Gao, Z Zhu, Y Wang, P Qin, C Liang… - Science, 2019 - science.org
Cytosine and adenine base editors (CBEs and ABEs) are promising new tools for achieving
the precise genetic changes required for disease treatment and trait improvement. However …

Transcriptome-wide off-target RNA editing induced by CRISPR-guided DNA base editors

J Grünewald, R Zhou, SP Garcia, S Iyer, CA Lareau… - Nature, 2019 - nature.com
CRISPR–Cas base-editor technology enables targeted nucleotide alterations, and is being
increasingly used for research and potential therapeutic applications,. The most widely used …

Evaluation and minimization of Cas9-independent off-target DNA editing by cytosine base editors

JL Doman, A Raguram, GA Newby, DR Liu - Nature biotechnology, 2020 - nature.com
Cytosine base editors (CBEs) enable targeted C• G-to-T• A conversions in genomic DNA.
Recent studies report that BE3, the original CBE, induces a low frequency of genome-wide …

Cytosine base editor generates substantial off-target single-nucleotide variants in mouse embryos

E Zuo, Y Sun, W Wei, T Yuan, W Ying, H Sun, L Yuan… - Science, 2019 - science.org
Genome editing holds promise for correcting pathogenic mutations. However, it is difficult to
determine off-target effects of editing due to single-nucleotide polymorphism in individuals …