Positive and negative selection of the T cell repertoire: what thymocytes see (and don't see)

L Klein, B Kyewski, PM Allen… - Nature Reviews …, 2014 - nature.com
The fate of developing T cells is specified by the interaction of their antigen receptors with
self-peptide–MHC complexes that are displayed by thymic antigen-presenting cells (APCs) …

The mechanisms of T cell selection in the thymus

H Takaba, H Takayanagi - Trends in immunology, 2017 - cell.com
T cells undergo positive and negative selection in the thymic cortex and medulla,
respectively. A promiscuous expression of a wide array of self-antigens in the thymus is …

Histone recognition and large-scale structural analysis of the human bromodomain family

P Filippakopoulos, S Picaud, M Mangos, T Keates… - Cell, 2012 - cell.com
Bromodomains (BRDs) are protein interaction modules that specifically recognize ε-N-lysine
acetylation motifs, a key event in the reading process of epigenetic marks. The 61 BRDs in …

Thymic epithelial cells

J Abramson, G Anderson - Annual review of immunology, 2017 - annualreviews.org
Intrathymic T cell development is a complex process that depends upon continuous
guidance from thymus stromal cell microenvironments. The thymic epithelium within the …

T-cell tolerance: central and peripheral

Y Xing, KA Hogquist - Cold Spring Harbor perspectives …, 2012 - cshperspectives.cshlp.org
Somatic recombination of TCR genes in immature thymocytes results in some cells with
useful TCR specificities, but also many with useless or potentially self-reactive specificities …

Readers of histone modifications

M Yun, J Wu, JL Workman, B Li - Cell research, 2011 - nature.com
Histone modifications not only play important roles in regulating chromatin structure and
nuclear processes but also can be passed to daughter cells as epigenetic marks …

Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia

SN Sansom, N Shikama-Dorn, S Zhanybekova… - Genome …, 2014 - genome.cshlp.org
Promiscuous gene expression (PGE) by thymic epithelial cells (TEC) is essential for
generating a diverse T cell antigen receptor repertoire tolerant to self-antigens, and thus for …

The PHD finger: a versatile epigenome reader

R Sanchez, MM Zhou - Trends in biochemical sciences, 2011 - cell.com
PHD (plant homeodomain) zinc fingers are structurally conserved modules found in proteins
that modify chromatin as well as mediate molecular interactions in gene transcription. The …

AIRE expands: new roles in immune tolerance and beyond

MS Anderson, MA Su - Nature Reviews Immunology, 2016 - nature.com
More than 15 years ago, mutations in the autoimmune regulator (AIRE) gene were identified
as the cause of autoimmune polyglandular syndrome type 1 (APS1). It is now clear that this …

Dominant mutations in the autoimmune regulator AIRE are associated with common organ-specific autoimmune diseases

BE Oftedal, A Hellesen, MM Erichsen, E Bratland… - Immunity, 2015 - cell.com
The autoimmune regulator (AIRE) gene is crucial for establishing central immunological
tolerance and preventing autoimmunity. Mutations in AIRE cause a rare autosomal …