Ecological modelling approaches for predicting emergent properties in microbial communities

NI van den Berg, D Machado, S Santos… - Nature ecology & …, 2022 - nature.com
Recent studies have brought forward the critical role of emergent properties in shaping
microbial communities and the ecosystems of which they are a part. Emergent properties …

Biophysical processes supporting the diversity of microbial life in soil

R Tecon, D Or - FEMS microbiology reviews, 2017 - academic.oup.com
Soil, the living terrestrial skin of the Earth, plays a central role in supporting life and is home
to an unimaginable diversity of microorganisms. This review explores key drivers for …

Advancing microbial sciences by individual-based modelling

FL Hellweger, RJ Clegg, JR Clark, CM Plugge… - Nature Reviews …, 2016 - nature.com
Remarkable technological advances have revealed ever more properties and behaviours of
individual microorganisms, but the novel data generated by these techniques have not yet …

Spatial organization of bacterial populations in response to oxygen and carbon counter-gradients in pore networks

B Borer, R Tecon, D Or - Nature communications, 2018 - nature.com
Microbial activity in soil is spatially heterogeneous often forming spatial hotspots that
contribute disproportionally to biogeochemical processes. Evidence suggests that bacterial …

The extent of functional redundancy changes as species' roles shift in different environments

I Fetzer, K Johst, R Schäwe, T Banitz… - Proceedings of the …, 2015 - National Acad Sciences
Assessing the ecological impacts of environmental change requires knowledge of the
relationship between biodiversity and ecosystem functioning. The exact nature of this …

Making predictions in a changing world: the benefits of individual-based ecology

RA Stillman, SF Railsback, J Giske, UTA Berger… - …, 2015 - academic.oup.com
Ecologists urgently need a better ability to predict how environmental change affects
biodiversity. We examine individual-based ecology (IBE), a research paradigm that …

Biogeographic patterns in ocean microbes emerge in a neutral agent-based model

FL Hellweger, E van Sebille, ND Fredrick - Science, 2014 - science.org
A key question in ecology and evolution is the relative role of natural selection and neutral
evolution in producing biogeographic patterns. We quantify the role of neutral processes by …

The physics of biofilms—an introduction

MG Mazza - Journal of Physics D: Applied Physics, 2016 - iopscience.iop.org
Biofilms are complex, self-organized consortia of microorganisms that produce a functional,
protective matrix of biomolecules. Physically, the structure of a biofilm can be described as …

Host-pathogen interactions between the human innate immune system and Candida albicans—understanding and modeling defense and evasion strategies

S Dühring, S Germerodt, C Skerka, PF Zipfel… - Frontiers in …, 2015 - frontiersin.org
The diploid, polymorphic yeast Candida albicans is one of the most important human
pathogenic fungi. C. albicans can grow, proliferate and coexist as a commensal on or within …

Physical, chemical and biological effects on soil bacterial dynamics in microscale models

S König, HJ Vogel, H Harms, A Worrich - Frontiers in Ecology and …, 2020 - frontiersin.org
Soil is populated by highly diverse microbial communities mediating important processes
and functions. The distribution of microbes, however, is neither uniform nor random. Instead …