MegIS: High-Performance, Energy-Efficient, and Low-Cost Metagenomic Analysis with In-Storage Processing

NM Ghiasi, M Sadrosadati, H Mustafa… - 2024 ACM/IEEE 51st …, 2024 - ieeexplore.ieee.org
Metagenomics, the study of the genome sequences of diverse organisms in a common
environment, has led to significant advances in many fields. Since the species present in a …

Metabuli: sensitive and specific metagenomic classification via joint analysis of amino acid and DNA

J Kim, M Steinegger - Nature Methods, 2024 - nature.com
Metagenomic taxonomic classifiers analyze either DNA or amino acid (AA) sequences.
Metabuli (https://metabuli. steineggerlab. com), however, jointly analyzes both DNA and AA …

MetaStore: High-Performance Metagenomic Analysis via In-Storage Computing

NM Ghiasi, M Sadrosadati, H Mustafa… - arXiv preprint arXiv …, 2023 - arxiv.org
Metagenomics has led to significant advancements in many fields. Metagenomic analysis
commonly involves the key tasks of determining the species present in a sample and their …

Tools to Study Gut Microbiome

KS Sreevatshan, VG Nair, CS Srinandan… - Gut Microbiome in …, 2022 - Springer
Human microbiome consists of collective genomes of microbiota predominantly of bacteria,
which are living in various parts of the human body, out of these the gut harbors more. The …

Metabuli: sensitive and specific metagenomic classification via joint analysis of amino-acid and DNA

M Steinegger, J KIM - 2023 - researchsquare.com
Current metagenomic classifiers analyze either DNA or amino-acid (AA) sequences. DNA-
based methods have better specificity in distinguishing well-studied clades, but they have …

[PDF][PDF] Novel resource-efficient methods for robust and accurate taxonomic profiling of metagenomic data

S Weging - 2022 - opendata.uni-halle.de
Abstract English version: Examining the taxonomic composition of sequenced data is a
necessary step in almost any metagenomic analysis. Most existing and widely used …

[HTML][HTML] A survey of k-mer methods and applications in bioinformatics

C Moeckel, M Mareboina, MA Konnaris… - Computational and …, 2024 - Elsevier
The rapid progression of genomics and proteomics has been driven by the advent of
advanced sequencing technologies, large, diverse, and readily available omics datasets …