A field guide to eukaryotic transposable elements

JN Wells, C Feschotte - Annual review of genetics, 2020 - annualreviews.org
Transposable elements (TEs) are mobile DNA sequences that propagate within genomes.
Through diverse invasion strategies, TEs have come to occupy a substantial fraction of …

Integration site selection by retroviruses and transposable elements in eukaryotes

T Sultana, A Zamborlini, G Cristofari… - Nature Reviews …, 2017 - nature.com
Transposable elements and retroviruses are found in most genomes, can be pathogenic
and are widely used as gene-delivery and functional genomics tools. Exploring whether …

Transposable element influences on gene expression in plants

CD Hirsch, NM Springer - Biochimica et Biophysica Acta (BBA)-Gene …, 2017 - Elsevier
Transposable elements (TEs) comprise a major portion of many plant genomes and bursts
of TE movements cause novel genomic variation within species. In order to maintain proper …

Retroviral DNA integration

P Lesbats, AN Engelman, P Cherepanov - Chemical reviews, 2016 - ACS Publications
The integration of a DNA copy of the viral RNA genome into host chromatin is the defining
step of retroviral replication. This enzymatic process is catalyzed by the virus-encoded …

Mechanoresponsive stem cells acquire neural crest fate in jaw regeneration

RC Ransom, AC Carter, A Salhotra, T Leavitt… - Nature, 2018 - nature.com
During both embryonic development and adult tissue regeneration, changes in chromatin
structure driven by master transcription factors lead to stimulus-responsive transcriptional …

Design, construction, and functional characterization of a tRNA neochromosome in yeast

D Schindler, RSK Walker, S Jiang, AN Brooks, Y Wang… - Cell, 2023 - cell.com
Here, we report the design, construction, and characterization of a tRNA neochromosome, a
designer chromosome that functions as an additional, de novo counterpart to the native …

RNA polymerase III advances: structural and tRNA functional views

AG Arimbasseri, RJ Maraia - Trends in biochemical sciences, 2016 - cell.com
RNA synthesis in eukaryotes is divided among three RNA polymerases (RNAPs). RNAP III
transcribes hundreds of tRNA genes and fewer additional short RNA genes. We survey …

Contribution of transposable elements in the plant's genome

M Sahebi, MM Hanafi, AJ van Wijnen, D Rice, MY Rafii… - Gene, 2018 - Elsevier
Plants maintain extensive growth flexibility under different environmental conditions,
allowing them to continuously and rapidly adapt to alterations in their environment. A large …

An integrated model for termination of RNA polymerase III transcription

J Xie, U Aiello, Y Clement, N Haidara, M Girbig… - Science …, 2022 - science.org
RNA polymerase III (RNAPIII) synthesizes essential and abundant noncoding RNAs such as
transfer RNAs. Controlling RNAPIII span of activity by accurate and efficient termination is a …

Locus-specific proteome decoding reveals Fpt1 as a chromatin-associated negative regulator of RNA polymerase III assembly

ME van Breugel, I van Kruijsbergen, C Mittal, C Lieftink… - Molecular Cell, 2023 - cell.com
Transcription of tRNA genes by RNA polymerase III (RNAPIII) is tuned by signaling
cascades. The emerging notion of differential tRNA gene regulation implies the existence of …