Graph machine learning for integrated multi-omics analysis

NA Valous, F Popp, I Zörnig, D Jäger… - British Journal of …, 2024 - nature.com
Multi-omics experiments at bulk or single-cell resolution facilitate the discovery of hypothesis-
generating biomarkers for predicting response to therapy, as well as aid in uncovering …

Tumor initiation and early tumorigenesis: molecular mechanisms and interventional targets

S Zhang, X Xiao, Y Yi, X Wang, L Zhu, Y Shen… - … and Targeted Therapy, 2024 - nature.com
Tumorigenesis is a multistep process, with oncogenic mutations in a normal cell conferring
clonal advantage as the initial event. However, despite pervasive somatic mutations and …

[HTML][HTML] DNA methylation profiles in cancer: functions, therapy, and beyond

J Zhu, Y Yang, L Li, J Tang, R Zhang - Cancer Biology & Medicine, 2024 - ncbi.nlm.nih.gov
DNA methylation, a reversible post-replication modification, defines gene expression and
function in different physiologic processes. Hypomethylation is quite common among global …

[HTML][HTML] A methylation-related signature for predicting prognosis and sensitivity to first-line therapies in gastric cancer

C Cao, Z Luo, H Zhang, S Yao, H Lu… - Journal of …, 2023 - ncbi.nlm.nih.gov
Background Methylation modification patterns play a crucial role in human cancer
progression, especially in gastrointestinal cancers. We aimed to use methylation regulators …

Epigenomic insights into common human disease pathology

CG Bell - Cellular and Molecular Life Sciences, 2024 - Springer
The epigenome—the chemical modifications and chromatin-related packaging of the
genome—enables the same genetic template to be activated or repressed in different …

Tissue of origin prediction for cancer of unknown primary using a targeted methylation sequencing panel

M Sun, B Xu, C Chen, Y Zhu, X Li, K Chen - Clinical Epigenetics, 2024 - Springer
Rationale Cancer of unknown primary (CUP) is a group of rare malignancies with poor
prognosis and unidentifiable tissue-of-origin. Distinct DNA methylation patterns in different …

Integrated profiling identifies DXS253E as a potential prognostic marker in colorectal cancer

P Xing, H Hao, J Chen, X Qiao, T Song, X Yang… - Cancer Cell …, 2024 - Springer
Background Increasing evidence suggests that DXS253E is critical for cancer development
and progression, but the function and potential mechanism of DXS253E in colorectal cancer …

Comparison of spatial transcriptomics technologies across six cancer types

S Cervilla, D Grases, E Perez, E Musulen, FX Real… - bioRxiv, 2024 - biorxiv.org
Spatial biology experiments integrate the molecular and histological landscape of tissues to
provide a previously inaccessible view of tissue biology, unlocking the architecture of …

Comprehensive bioinformatics analysis of human cytomegalovirus pathway genes in pan-cancer

T Yan, X Pang, B Liang, Q Meng, H Wei, W Li, D Liu… - Human Genomics, 2024 - Springer
Background Human cytomegalovirus (HCMV) is a herpesvirus that can infect various cell
types and modulate host gene expression and immune response. It has been associated …

DNA 甲基化测序技术研究进展

袁明波, 叶国华, 杨丹, 宋冬雪 - 生物技术通报, 2024 - biotech.aiijournal.com
DNA 甲基化是一种重要的表观遗传修饰, 在动植物生长发育, 疾病发生, 基因表达调控等方面
发挥着关键作用. 临床上, DNA 甲基化肿瘤标志物可以作为肿瘤的诊断, 预后和治疗的生物标志 …