Prediction of protein structural classes

KC Chou, CT Zhang - Critical reviews in biochemistry and …, 1995 - Taylor & Francis
A protein is usually classified into one of the following five structural classes: α, β, α+ β, α/β,
and ζ (irregular). The structural class of a protein is correlated with its amino acid …

Helix capping

R Aurora, GD Rosee - Protein Science, 1998 - Wiley Online Library
Helix‐capping motifs are specific patterns of hydrogen bonding and hydrophobic
interactions found at or near the ends of helices in both proteins and peptides. In an α‐helix …

Protein backbone angle restraints from searching a database for chemical shift and sequence homology

G Cornilescu, F Delaglio, A Bax - Journal of biomolecular NMR, 1999 - Springer
Chemical shifts of backbone atoms in proteins are exquisitely sensitive to local
conformation, and homologous proteins show quite similar patterns of secondary chemical …

OB (oligonucleotide/oligosaccharide binding)‐fold: common structural and functional solution for non‐homologous sequences.

AG Murzin - The EMBO journal, 1993 - embopress.org
A novel folding motif has been observed in four different proteins which bind
oligonucleotides or oligosaccharides: staphylococcal nuclease, anticodon binding domain …

Empirical correlation between protein backbone conformation and C. alpha. and C. beta. 13C nuclear magnetic resonance chemical shifts

S Spera, A Bax - Journal of the American Chemical Society, 1991 - ACS Publications
For unstructured “randomcoil” peptides it has long been recognized that the chemical shift of
the Ca and side-chain carbons of a given residue is largely independent of the nature of …

3D domain swapping: as domains continue to swap

Y Liu, D Eisenberg - Protein science, 2002 - Wiley Online Library
Abstract Three‐dimensional (3D) domain swapping creates a bond between two or more
protein molecules as they exchange their identical domains. Since the term'3D domain …

3D domain swapping: a mechanism for oligomer assembly

MJ Bennett, MP Schlunegger, D Eisenberg - Protein science, 1995 - Wiley Online Library
Abstract 3D domain swapping is a mechanism for forming oligomeric proteins from their
monomers. In 3D domain swapping, one domain of a monomeric protein is replaced by the …

Enzymatic mechanisms of phosphate and sulfate transfer

WW Cleland, AC Hengge - Chemical reviews, 2006 - ACS Publications
Many biological molecules contain phosphate or sulfate, and the enzymatic reactions that
transfer these groups play important roles in metabolism. DNA and RNA are phosphate …

Hydrogen bonding in globular proteins

DF Sticke, LG Presta, KA Dill, GD Rose - Journal of molecular biology, 1992 - Elsevier
A global census of the hydrogen bonds in 42 X-ray-elucidated proteins was taken and the
following demographic trends identified:(1) Most hydrogen bonds are local, ie between …

[HTML][HTML] Glycophorin A dimerization is driven by specific interactions between transmembrane alpha-helices.

MA Lemmon, JM Flanagan, JF Hunt, BD Adair… - Journal of Biological …, 1992 - Elsevier
Specific side-by-side interactions between transmembrane alpha-helices may be important
in the assembly and function of integral membrane proteins. We describe a system for the …