Understanding the impacts of bacteriophage viruses: from laboratory evolution to natural ecosystems

B Koskella, CA Hernandez… - Annual Review of …, 2022 - annualreviews.org
Viruses of bacteria (bacteriophages or phage) have broad effects on bacterial ecology and
evolution in nature that mediate microbial interactions, shape bacterial diversity, and …

The landscape of lysogeny across microbial community density, diversity and energetics

CB Silveira, A Luque, F Rohwer - Environmental microbiology, 2021 - Wiley Online Library
Lysogens are common at high bacterial densities, an observation that contrasts with the
prevailing view of lysogeny as a low‐density refugium strategy. Here, we review the …

Lytic to temperate switching of viral communities

B Knowles, CB Silveira, BA Bailey, K Barott, VA Cantu… - Nature, 2016 - nature.com
Microbial viruses can control host abundances via density-dependent lytic predator–prey
dynamics. Less clear is how temperate viruses, which coexist and replicate with their host …

Deciphering the virus‐to‐prokaryote ratio (VPR): insights into virus–host relationships in a variety of ecosystems

KJ Parikka, M Le Romancer, N Wauters… - Biological …, 2017 - Wiley Online Library
The discovery of the numerical importance of viruses in a variety of (aquatic) ecosystems
has changed our perception of their importance in microbial processes. Bacteria and A …

A synthesis of carbon dioxide and methane dynamics during the ice‐covered period of northern lakes

BA Denfeld, HM Baulch, PA del Giorgio… - Limnology and …, 2018 - Wiley Online Library
The ice‐covered period on lakes in the northern hemisphere has often been neglected or
assumed to have less importance relative to the open water season. However, recent …

The under‐ice microbiome of seasonally frozen lakes

S Bertilsson, A Burgin, CC Carey… - Limnology and …, 2013 - Wiley Online Library
Compared to the well‐studied open water of the “growing” season, under‐ice conditions in
lakes are characterized by low and rather constant temperature, slow water movements …

A decade of seasonal dynamics and co-occurrences within freshwater bacterioplankton communities from eutrophic Lake Mendota, WI, USA

EL Kara, PC Hanson, YH Hu, L Winslow… - The ISME …, 2013 - academic.oup.com
With an unprecedented decade-long time series from a temperate eutrophic lake, we
analyzed bacterial and environmental co-occurrence networks to gain insight into seasonal …

Bacteriophages of the urinary microbiome

T Miller-Ensminger, A Garretto, J Brenner… - Journal of …, 2018 - Am Soc Microbiol
Bacterial viruses (bacteriophages) play a significant role in microbial community dynamics.
Within the human gastrointestinal tract, for instance, associations among bacteriophages …

Soil nutrient conditions alter viral lifestyle strategy and potential function in phosphorous and nitrogen metabolisms

X Huang, Z Zhou, H Liu, Y Li, T Ge, X Tang, Y He… - Soil Biology and …, 2024 - Elsevier
As one of the most abundant members of microbial communities, viruses are considered to
influence prokaryotic mortality and biogeochemical cycles. While extensive research has …

Lysogenic reproductive strategies of viral communities vary with soil depth and are correlated with bacterial diversity

X Liang, Y Zhang, KE Wommack, SW Wilhelm… - Soil Biology and …, 2020 - Elsevier
Increased awareness of the abundance and diversity of viruses in soils has led to a growing
interest in soil virus ecology. This interest is in part fueled by a need to understand the …