[HTML][HTML] Gene expression detection assay for cancer clinical use

S Narrandes, W Xu - Journal of Cancer, 2018 - ncbi.nlm.nih.gov
Cancer is a genetic disease where genetic variations cause abnormally functioning genes
that appear to alter expression. Proteins, the final products of gene expression, determine …

Cellular senescence is immunogenic and promotes antitumor immunity

I Marin, O Boix, A Garcia-Garijo, I Sirois, A Caballe… - Cancer discovery, 2023 - AACR
Cellular senescence is a stress response that activates innate immune cells, but little is
known about its interplay with the adaptive immune system. Here, we show that senescent …

Multi‐omic rejuvenation of naturally aged tissues by a single cycle of transient reprogramming

D Chondronasiou, D Gill, L Mosteiro, RG Urdinguio… - Aging …, 2022 - Wiley Online Library
The expression of the pluripotency factors OCT4, SOX2, KLF4, and MYC (OSKM) can
convert somatic differentiated cells into pluripotent stem cells in a process known as …

The use of exome capture RNA-seq for highly degraded RNA with application to clinical cancer sequencing

M Cieslik, R Chugh, YM Wu, M Wu, C Brennan… - Genome …, 2015 - genome.cshlp.org
RNA-seq by poly (A) selection is currently the most common protocol for whole
transcriptome sequencing as it provides a broad, detailed, and accurate view of the RNA …

[HTML][HTML] DRIMSeq: a Dirichlet-multinomial framework for multivariate count outcomes in genomics

M Nowicka, MD Robinson - F1000Research, 2016 - ncbi.nlm.nih.gov
There are many instances in genomics data analyses where measurements are made on a
multivariate response. For example, alternative splicing can lead to multiple expressed …

Leveraging transcript quantification for fast computation of alternative splicing profiles

GP Alamancos, A Pagès, JL Trincado, N Bellora… - Rna, 2015 - rnajournal.cshlp.org
Alternative splicing plays an essential role in many cellular processes and bears major
relevance in the understanding of multiple diseases, including cancer. High-throughput RNA …

Isoform prefiltering improves performance of count-based methods for analysis of differential transcript usage

C Soneson, KL Matthes, M Nowicka, CW Law… - Genome biology, 2016 - Springer
Background RNA-seq has been a boon to the quantitative analysis of transcriptomes. A
notable application is the detection of changes in transcript usage between experimental …

RNA toxicity and missplicing in the common eye disease fuchs endothelial corneal dystrophy

J Du, RA Aleff, E Soragni, K Kalari, J Nie, X Tang… - Journal of Biological …, 2015 - ASBMB
Fuchs endothelial corneal dystrophy (FECD) is an inherited degenerative disease that
affects the internal endothelial cell monolayer of the cornea and can result in corneal edema …

Autophagy-mediated NCOR1 degradation is required for brown fat maturation and thermogenesis

A Sabaté-Pérez, M Romero… - Autophagy, 2023 - Taylor & Francis
Brown adipose tissue (BAT) thermogenesis affects energy balance, and thereby it has the
potential to induce weight loss and to prevent obesity. Here, we document a …

Identification and drug-induced reversion of molecular signatures of Alzheimer's disease onset and progression in AppNL-GF, AppNL-F, and 3xTg-AD mouse …

E Pauls, S Bayod, L Mateo, V Alcalde, T Juan-Blanco… - Genome Medicine, 2021 - Springer
Background In spite of many years of research, our understanding of the molecular bases of
Alzheimer's disease (AD) is still incomplete, and the medical treatments available mainly …