[HTML][HTML] Open data and algorithms for open science in AI-driven molecular informatics

HO Brinkhaus, K Rajan, J Schaub, A Zielesny… - Current Opinion in …, 2023 - Elsevier
Recent years have seen a sharp increase in the development of deep learning and artificial
intelligence-based molecular informatics. There has been a growing interest in applying …

Interactive quantum chemistry enabled by machine learning, graphical processing units, and cloud computing

U Raucci, H Weir, S Sakshuwong… - Annual Review of …, 2023 - annualreviews.org
Modern quantum chemistry algorithms are increasingly able to accurately predict molecular
properties that are useful for chemists in research and education. Despite this progress …

Img2Mol–accurate SMILES recognition from molecular graphical depictions

DA Clevert, T Le, R Winter, F Montanari - Chemical science, 2021 - pubs.rsc.org
The automatic recognition of the molecular content of a molecule's graphical depiction is an
extremely challenging problem that remains largely unsolved despite decades of research …

DECIMER. ai: an open platform for automated optical chemical structure identification, segmentation and recognition in scientific publications

K Rajan, HO Brinkhaus, MI Agea, A Zielesny… - Nature …, 2023 - nature.com
The number of publications describing chemical structures has increased steadily over the
last decades. However, the majority of published chemical information is currently not …

MolScribe: robust molecular structure recognition with image-to-graph generation

Y Qian, J Guo, Z Tu, Z Li, CW Coley… - Journal of Chemical …, 2023 - ACS Publications
Molecular structure recognition is the task of translating a molecular image into its graph
structure. Significant variation in drawing styles and conventions exhibited in chemical …

DECIMER 1.0: deep learning for chemical image recognition using transformers

K Rajan, A Zielesny, C Steinbeck - Journal of Cheminformatics, 2021 - Springer
The amount of data available on chemical structures and their properties has increased
steadily over the past decades. In particular, articles published before the mid-1990 are …

Discovery of multitarget inhibitors against insect chitinolytic enzymes via machine learning-based virtual screening

Y Ding, S Chen, H Liu, T Liu… - Journal of Agricultural and …, 2023 - ACS Publications
Multitarget inhibitors of insect chitinolytic enzymes are promising sources of green
insecticides. Machine learning (ML) is an emerging virtual screening method that can …

Image2SMILES: Transformer‐based molecular optical recognition engine

I Khokhlov, L Krasnov, MV Fedorov… - Chemistry …, 2022 - Wiley Online Library
The rise of deep learning in various scientific and technology areas promotes the
development of AI‐based tools for information retrieval. Optical recognition of organic …

DECIMER—hand-drawn molecule images dataset

HO Brinkhaus, A Zielesny, C Steinbeck… - Journal of …, 2022 - Springer
The translation of images of chemical structures into machine-readable representations of
the depicted molecules is known as optical chemical structure recognition (OCSR). There …

CEDe: A collection of expert-curated datasets with atom-level entity annotations for Optical Chemical Structure Recognition

R Hormazabal, C Park, S Lee, S Han… - Advances in …, 2022 - proceedings.neurips.cc
Abstract Optical Chemical Structure Recognition (OCSR) deals with the translation from
chemical images to molecular structures, this being the main way chemical compounds are …