[HTML][HTML] Sociotechnical safeguards for genomic data privacy

Z Wan, JW Hazel, EW Clayton, Y Vorobeychik… - Nature Reviews …, 2022 - nature.com
Recent developments in a variety of sectors, including health care, research and the direct-
to-consumer industry, have led to a dramatic increase in the amount of genomic data that …

Deep learning as a tool for ecology and evolution

ML Borowiec, RB Dikow, PB Frandsen… - Methods in Ecology …, 2022 - Wiley Online Library
Deep learning is driving recent advances behind many everyday technologies, including
speech and image recognition, natural language processing and autonomous driving. It is …

[HTML][HTML] Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models

RL Allesøe, AT Lundgaard, R Hernández Medina… - Nature …, 2023 - nature.com
The application of multiple omics technologies in biomedical cohorts has the potential to
reveal patient-level disease characteristics and individualized response to treatment …

Harnessing deep learning for population genetic inference

X Huang, A Rymbekova, O Dolgova, O Lao… - Nature Reviews …, 2024 - nature.com
In population genetics, the emergence of large-scale genomic data for various species and
populations has provided new opportunities to understand the evolutionary forces that drive …

Toward an integrated machine learning model of a proteomics experiment

BA Neely, V Dorfer, L Martens, I Bludau… - Journal of proteome …, 2023 - ACS Publications
In recent years machine learning has made extensive progress in modeling many aspects of
mass spectrometry data. We brought together proteomics data generators, repository …

[PDF][PDF] Deep learning in population genetics

K Korfmann, OE Gaggiotti… - Genome Biology and …, 2023 - academic.oup.com
Population genetics is transitioning into a data-driven discipline thanks to the availability of
large-scale genomic data and the need to study increasingly complex evolutionary …

[HTML][HTML] Recent advances in generative adversarial networks for gene expression data: a comprehensive review

M Lee - Mathematics, 2023 - mdpi.com
The evolving field of generative artificial intelligence (GenAI), particularly generative deep
learning, is revolutionizing a host of scientific and technological sectors. One of the pivotal …

Visualizing population structure with variational autoencoders

CJ Battey, GC Coffing, AD Kern - G3, 2021 - academic.oup.com
Dimensionality reduction is a common tool for visualization and inference of population
structure from genotypes, but popular methods either return too many dimensions for easy …

Restricted Boltzmann machine: Recent advances and mean-field theory

A Decelle, C Furtlehner - Chinese Physics B, 2021 - iopscience.iop.org
This review deals with restricted Boltzmann machine (RBM) under the light of statistical
physics. The RBM is a classical family of machine learning (ML) models which played a …

Deep learning for population size history inference: Design, comparison and combination with approximate Bayesian computation

T Sanchez, J Cury, G Charpiat… - Molecular Ecology …, 2021 - Wiley Online Library
For the past decades, simulation‐based likelihood‐free inference methods have enabled
researchers to address numerous population genetics problems. As the richness and …