Easy and accurate protein structure prediction using ColabFold

G Kim, S Lee, E Levy Karin, H Kim, Y Moriwaki… - Nature …, 2024 - nature.com
Since its public release in 2021, AlphaFold2 (AF2) has made investigating biological
questions, by using predicted protein structures of single monomers or full complexes, a …

Structure prediction of alternative protein conformations

P Bryant, F Noé - Nature Communications, 2024 - nature.com
Proteins are dynamic molecules whose movements result in different conformations with
different functions. Neural networks such as AlphaFold2 can predict the structure of single …

High-throughput prediction of protein conformational distributions with subsampled AlphaFold2

G Monteiro da Silva, JY Cui, DC Dalgarno… - nature …, 2024 - nature.com
This paper presents an innovative approach for predicting the relative populations of protein
conformations using AlphaFold 2, an AI-powered method that has revolutionized biology by …

Mapping glycoprotein structure reveals Flaviviridae evolutionary history

JCO Mifsud, S Lytras, MR Oliver, K Toon, VA Costa… - Nature, 2024 - nature.com
Viral glycoproteins drive membrane fusion in enveloped viruses and determine host range,
tissue tropism and pathogenesis. Despite their importance, there is a fragmentary …

Deep learning insights into the architecture of the mammalian egg-sperm fusion synapse

A Elofsson, L Han, E Bianchi, GJ Wright, L Jovine - Elife, 2024 - elifesciences.org
A crucial event in sexual reproduction is when haploid sperm and egg fuse to form a new
diploid organism at fertilization. In mammals, direct interaction between egg JUNO and …

Computing the human interactome

J Zhang, IR Humphreys, J Pei, J Kim, C Choi, R Yuan… - bioRxiv, 2024 - biorxiv.org
Protein-protein interactions (PPI) are essential for biological function. Recent advances in
coevolutionary analysis and Deep Learning (DL) based protein structure prediction have …

GPU-accelerated homology search with MMseqs2

F Kallenborn, A Chacon, C Hundt, H Sirelkhatim, K Didi… - bioRxiv, 2024 - biorxiv.org
Sensitive search of rapidly growing protein sequence databases for evolutionary information
requires continual acceleration. This is achieved by innovating algorithms to filter …

NEAR: Neural Embeddings for Amino acid Relationships

DR Olson, D Demekas, T Colligan, T Wheeler - bioRxiv, 2024 - biorxiv.org
We present NEAR, a method based on representation learning that is designed to rapidly
identify good sequence alignment candidates from a large protein database. NEAR's neural …

هوش مصنوعی در ژنتیک پزشکی: افزایش مشاوره ژنتیک و مراقبت از بیمار از طریق تجزیه و تحلیل داده‌های پیشرفته

صارمی, ابوطالب, عباسی, کریمی منصورآباد… - مجله تحقيقات پزشكي …, 2023‎ - saremjrm.com
Artificial Intelligence in Medical Genetics: Enhancing Genetic Counseling and Patient Care
through Advanced Data Analysis Page 1 Copyright© 2021, ASP Ins. This open-access …