Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks

X Guo, L Gao, Q Liao, H Xiao, X Ma, X Yang… - Nucleic acids …, 2013 - academic.oup.com
More and more evidences demonstrate that the long non-coding RNAs (lncRNAs) play
many key roles in diverse biological processes. There is a critical need to annotate the …

PaGenBase: a pattern gene database for the global and dynamic understanding of gene function

JB Pan, SC Hu, D Shi, MC Cai, YB Li, Q Zou, ZL Ji - PloS one, 2013 - journals.plos.org
Pattern genes are a group of genes that have a modularized expression behavior under
serial physiological conditions. The identification of pattern genes will provide a path toward …

PaGeFinder: quantitative identification of spatiotemporal pattern genes

JB Pan, SC Hu, H Wang, Q Zou, ZL Ji - Bioinformatics, 2012 - academic.oup.com
Pattern Gene Finder (PaGeFinder) is a web-based server for on-line detection of gene
expression patterns from serial transcriptomic data generated by high-throughput …

Temporal correction of irregular observed intervals of groundwater level series using interpolation techniques

MR Zaghiyan, S Eslamian, A Gohari… - Theoretical and Applied …, 2021 - Springer
Groundwater level observations due to the lack of synoptic water-level measurements are
often available with irregular time intervals. The results lead to an inaccurate understanding …

Conservation and Diversification of Circadian Rhythmicity Between a Model Crassulacean Acid Metabolism Plant Kalanchoë fedtschenkoi and a Model C3 Photosynthesis …

RC Moseley, R Mewalal, F Motta, GA Tuskan… - Frontiers in Plant …, 2018 - frontiersin.org
Crassulacean acid metabolism (CAM) improves photosynthetic efficiency under limited
water availability relative to C3 photosynthesis. It is widely accepted that CAM plants have …

A statistical time-frequency model for non-stationary time series analysis

Y Luo, Y Wang - IEEE Transactions on Signal Processing, 2020 - ieeexplore.ieee.org
Time-frequency analysis (TFA) plays an important role in various engineering and
biomedical fields. For a non-stationary time series, a common practice is to divide data into …

Predicting plant growth response under fluctuating temperature by carbon balance modelling

C Seydel, J Biener, V Brodsky, S Eberlein… - Communications …, 2022 - nature.com
Quantification of system dynamics is a central aim of mathematical modelling in biology.
Defining experimentally supported functional relationships between molecular entities by …

Valid application of western blotting

L Wu, X Hu, H Tang, Z Han, Y Chen - Molecular biology reports, 2014 - Springer
Western blotting is a powerful and commonly used tool to identify and quantify a specific
protein in a complex mixture. However, the systematic errors in the application of western …

A new gene tree algorithm employing DNA sequences of bovine genome using discrete Fourier transformation

R Abadeh, M Aminafshar, M Ghaderi-Zefrehei… - Plos one, 2023 - journals.plos.org
Within the realms of human thoughts on nature, Fourier analysis is considered as one of the
greatest ideas currently put forwarded. The Fourier transform shows that any periodic …

Partitioning the Human Transcriptome Using HKera, a Novel Classifier of Housekeeping and Tissue-Specific Genes

AWT Chiang, GTW Shaw, MJ Hwang - PLoS One, 2013 - journals.plos.org
High-throughput transcriptomic experiments have made it possible to classify genes that are
ubiquitously expressed as housekeeping (HK) genes and those expressed only in selective …