Sequencing pools of individuals—mining genome-wide polymorphism data without big funding
The analysis of polymorphism data is becoming increasingly important as a complementary
tool to classical genetic analyses. Nevertheless, despite plunging sequencing costs …
tool to classical genetic analyses. Nevertheless, despite plunging sequencing costs …
Whole‐genome sequencing approaches for conservation biology: Advantages, limitations and practical recommendations
AP Fuentes‐Pardo, DE Ruzzante - Molecular ecology, 2017 - Wiley Online Library
Whole‐genome resequencing (WGR) is a powerful method for addressing fundamental
evolutionary biology questions that have not been fully resolved using traditional methods …
evolutionary biology questions that have not been fully resolved using traditional methods …
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx
Background Genomic studies of endangered species provide insights into their evolution
and demographic history, reveal patterns of genomic erosion that might limit their viability …
and demographic history, reveal patterns of genomic erosion that might limit their viability …
SNPGenie: estimating evolutionary parameters to detect natural selection using pooled next-generation sequencing data
New applications of next-generation sequencing technologies use pools of DNA from
multiple individuals to estimate population genetic parameters. However, no publicly …
multiple individuals to estimate population genetic parameters. However, no publicly …
A flexible multi‐species genome‐wide 60K SNP chip developed from pooled resequencing of 240 Eucalyptus tree genomes across 12 species
OB Silva‐Junior, DA Faria, D Grattapaglia - New Phytologist, 2015 - Wiley Online Library
We used whole genome resequencing of pooled individuals to develop a high‐density
single‐nucleotide polymorphism (SNP) chip for Eucalyptus. Genomes of 240 trees of 12 …
single‐nucleotide polymorphism (SNP) chip for Eucalyptus. Genomes of 240 trees of 12 …
Population genomics from pool sequencing
L Ferretti, SE Ramos‐Onsins… - Molecular …, 2013 - Wiley Online Library
Next generation sequencing of pooled samples is an effective approach for studies of
variability and differentiation in populations. In this paper we provide a comprehensive set of …
variability and differentiation in populations. In this paper we provide a comprehensive set of …
Drosophila Evolution over Space and Time (DEST): A New Population Genomics Resource
Drosophila melanogaster is a leading model in population genetics and genomics, and a
growing number of whole-genome data sets from natural populations of this species have …
growing number of whole-genome data sets from natural populations of this species have …
Single Geographic Origin of a Widespread Autotetraploid Arabidopsis arenosa Lineage Followed by Interploidy Admixture
Whole-genome duplication, which leads to polyploidy, has been implicated in speciation
and biological novelty. In plants, many species exhibit ploidy variation, which is likely …
and biological novelty. In plants, many species exhibit ploidy variation, which is likely …
Climate‐specific biosynthetic gene clusters in populations of a lichen‐forming fungus
G Singh, A Calchera, M Schulz… - Environmental …, 2021 - Wiley Online Library
Natural products can contribute to abiotic stress tolerance in plants and fungi. We
hypothesize that biosynthetic gene clusters (BGCs), the genomic elements that underlie …
hypothesize that biosynthetic gene clusters (BGCs), the genomic elements that underlie …
Intra-species differences in population size shape life history and genome evolution
The evolutionary forces shaping life history divergence within species are largely unknown.
Turquoise killifish display differences in lifespan among wild populations, representing an …
Turquoise killifish display differences in lifespan among wild populations, representing an …