Plant pan-genomics and its applications

J Shi, Z Tian, J Lai, X Huang - Molecular Plant, 2023 - cell.com
Plant genomes are so highly diverse that a substantial proportion of genomic sequences are
not shared among individuals. The variable DNA sequences, along with the conserved core …

Solanum americanum genome-assisted discovery of immune receptors that detect potato late blight pathogen effectors

X Lin, Y Jia, R Heal, M Prokchorchik… - Nature Genetics, 2023 - nature.com
Potato (Solanum tuberosum) and tomato (Solanum lycopersicon) crops suffer severe losses
to late blight caused by the oomycete pathogen Phytophthora infestans. Solanum …

Recent Advances in Assembly of Complex Plant Genomes

W Kong, Y Wang, S Zhang, J Yu… - Genomics, Proteomics & …, 2023 - academic.oup.com
Over the past 20 years, tremendous advances in sequencing technologies and
computational algorithms have spurred plant genomic research into a thriving era with …

[HTML][HTML] Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding

Y Wu, D Li, Y Hu, H Li, GP Ramstein, S Zhou, X Zhang… - Cell, 2023 - cell.com
Hybrid potato breeding will transform the crop from a clonally propagated tetraploid to a
seed-reproducing diploid. Historical accumulation of deleterious mutations in potato …

The autotetraploid potato genome provides insights into highly heterozygous species

F Wang, Z Xia, M Zou, L Zhao, S Jiang… - Plant biotechnology …, 2022 - Wiley Online Library
Potato (Solanum tuberosum L.) originated in the Andes and evolved its vegetative
propagation strategy through short day‐dependent tuber development. Herein, we present a …

The gap-free potato genome assembly reveals large tandem gene clusters of agronomical importance in highly repeated genomic regions

X Yang, L Zhang, X Guo, J Xu, K Zhang, Y Yang… - Molecular plant, 2023 - cell.com
Potato is a vital food security crop and is ranked as the world's third most important food crop
after rice and wheat. In 2011, the first genome assembly of a doubled monoploid potato DM1 …

Chromosome-level phased genome assembly of “Antonovka” identified candidate apple scab-resistance genes highly homologous to HcrVf2 and HcrVf1 on linkage …

A Švara, H Sun, Z Fei, A Khan - G3: Genes, Genomes, Genetics, 2024 - academic.oup.com
Apple scab, a fungal disease caused by Venturia inaequalis, leads to losses in both yield
and fruit quality of apples (Malus domestica Borkh.). Most commercial apple cultivars …

Foreign DNA detection in genome-edited potatoes by high-throughput sequencing

S Yasumoto, T Muranaka - Scientific Reports, 2023 - nature.com
Genome editing is a powerful breeding technique that introduces mutations into specific
gene sequences in genomes. For genome editing in higher plants, nucleotides for artificial …

Pan-evolutionary and regulatory genome architecture delineated by an integrated macro-and microsynteny approach

H Yu, Y Li, W Han, L Bao, F Liu, Y Ma, Z Pu, Q Zeng… - Nature …, 2024 - nature.com
The forthcoming massive genome data generated by the Earth BioGenome Project will open
up a new era of comparative genomics, for which genome synteny analysis provides an …

Converting hybrid potato breeding science into practice

ME de Vries, JR Adams, E Eggers, S Ying, JE Stockem… - Plants, 2023 - mdpi.com
Research on diploid hybrid potato has made fast advances in recent years. In this review we
give an overview of the most recent and relevant research outcomes. We define different …