Yeast evolutionary genomics

B Dujon - Nature Reviews Genetics, 2010 - nature.com
Over the past few years, genome sequences have become available from an increasing
range of yeast species, which has led to notable advances in our understanding of …

Genome diversity and evolution in the budding yeasts (Saccharomycotina)

BA Dujon, EJ Louis - Genetics, 2017 - academic.oup.com
Considerable progress in our understanding of yeast genomes and their evolution has been
made over the last decade with the sequencing, analysis, and comparisons of numerous …

Endogenous miRNA sponges

AH Alkan, B Akgül - miRNomics: MicroRNA Biology and Computational …, 2022 - Springer
MicroRNAs (miRNAs) are a class of noncoding RNAs of 17–22 nucleotides in length with a
critical function in posttranscriptional gene regulation. These master regulators are …

Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus

N Vakirlis, V Sarilar, G Drillon, A Fleiss, N Agier… - Genome …, 2016 - genome.cshlp.org
Reconstructing genome history is complex but necessary to reveal quantitative principles
governing genome evolution. Such reconstruction requires recapitulating into a single …

Discovering the hidden function in fungal genomes

NC Gervais, RS Shapiro - Nature Communications, 2024 - nature.com
New molecular technologies have helped unveil previously unexplored facets of the
genome beyond the canonical proteome, including microproteins and short ORFs, products …

Massive Changes in Genome Architecture Accompany the Transition to Self-Fertility in the Filamentous Fungus Neurospora tetrasperma

CE Ellison, JE Stajich, DJ Jacobson, DO Natvig… - Genetics, 2011 - academic.oup.com
A large region of suppressed recombination surrounds the sex-determining locus of the self-
fertile fungus Neurospora tetrasperma. This region encompasses nearly one-fifth of the N …

Pseudogenes and their genome-wide prediction in plants

J Xiao, MK Sekhwal, P Li, R Ragupathy… - International Journal of …, 2016 - mdpi.com
Pseudogenes are paralogs generated from ancestral functional genes (parents) during
genome evolution, which contain critical defects in their sequences, such as lacking a …

Complementation of CTB7 in the Maize Pathogen Cercospora zeina Overcomes the Lack of In Vitro Cercosporin Production

V Swart, BG Crampton, JB Ridenour… - Molecular plant …, 2017 - Am Phytopath Society
Gray leaf spot (GLS), caused by the sibling species Cercospora zeina or Cercospora zeae-
maydis, is cited as one of the most important diseases threatening global maize production …

[HTML][HTML] HMGA1-pseudogenes and cancer

M De Martino, F Forzati, C Arra, A Fusco, F Esposito - Oncotarget, 2016 - ncbi.nlm.nih.gov
Pseudogenes are DNA sequences with high homology to the corresponding functional
gene, but, because of the accumulation of various mutations, they have lost their initial …

A gene graveyard in the genome of the fungus Podospora comata

P Silar, JM Dauget, V Gautier, P Grognet… - Molecular Genetics and …, 2019 - Springer
Mechanisms involved in fine adaptation of fungi to their environment include differential
gene regulation associated with single nucleotide polymorphisms and indels (including …