A census of pathway maps in cancer systems biology

BM Kuenzi, T Ideker - Nature Reviews Cancer, 2020 - nature.com
A key goal of cancer systems biology is to use big data to elucidate the molecular networks
by which cancer develops. However, to date there has been no systematic evaluation of how …

AXL as a target in breast cancer therapy

SA Colavito - Journal of oncology, 2020 - Wiley Online Library
AXL is a receptor tyrosine kinase (RTK) that has been implicated in diverse tumor‐promoting
processes such as proliferation, migration, invasion, survival, and apoptosis. AXL therefore …

[HTML][HTML] Receptor-driven ERK pulses reconfigure MAPK signaling and enable persistence of drug-adapted BRAF-mutant melanoma cells

L Gerosa, C Chidley, F Fröhlich, G Sanchez, SK Lim… - Cell systems, 2020 - cell.com
Targeted inhibition of oncogenic pathways can be highly effective in halting the rapid growth
of tumors but often leads to the emergence of slowly dividing persister cells, which constitute …

AXL receptor in breast cancer: molecular involvement and therapeutic limitations

I Falcone, F Conciatori, C Bazzichetto, E Bria… - International journal of …, 2020 - mdpi.com
Breast cancer was one of the first malignancies to benefit from targeted therapy, ie,
treatments directed against specific markers. Inhibitors against HER2 are a significant …

Concurrent inhibition of FAK/SRC and MEK overcomes MEK inhibitor resistance in Neurofibromatosis Type I related malignant peripheral nerve sheath tumors

Y Gu, C Wei, M Chung, H Li, Z Guo, M Long, Y Li… - Frontiers in …, 2022 - frontiersin.org
Malignant peripheral nerve sheath tumors (MPNST) are aggressive soft-tissue sarcomas
which lack effective drugs. Loss of the RAS GTPase-activating protein NF1 and subsequent …

Mechanistic and data-driven models of cell signaling: Tools for fundamental discovery and rational design of therapy

PJ Myers, SH Lee, MJ Lazzara - Current opinion in systems biology, 2021 - Elsevier
A full understanding of cell signaling processes requires knowledge of protein structure–
function relationships, protein–protein interactions, and the abilities of pathways to control …

[HTML][HTML] Network rewiring, adaptive resistance and combating strategies in breast cancer

CG Cremers, LK Nguyen - Cancer Drug Resistance, 2019 - ncbi.nlm.nih.gov
Resistance to targeted anti-cancer drugs is a complex phenomenon and a major challenge
in cancer treatment. It is becoming increasingly evident that a form of acquired drug …

[HTML][HTML] Mathematical Modeling and Inference of Epidermal Growth Factor-Induced Mitogen-Activated Protein Kinase Cell Signaling Pathways

J Feng, X Zhang, T Tian - International Journal of Molecular Sciences, 2024 - mdpi.com
The mitogen-activated protein kinase (MAPK) pathway is an important intracellular signaling
cascade that plays a key role in various cellular processes. Understanding the regulatory …

Sporadic ERK pulses drive non-genetic resistance in drug-adapted BRAFV600E melanoma cells

L Gerosa, C Chidley, F Froehlich, G Sanchez, SK Lim… - BioRxiv, 2019 - biorxiv.org
Anti-cancer drugs commonly target signal transduction proteins activated by mutation. In
patients with BRAFV600E melanoma, small molecule RAF and MEK kinase inhibitors cause …

An integrated mechanistic and data-driven computational model predicts cell responses to high-and low-affinity EGFR ligands

PJ Myers, SH Lee, MJ Lazzara - bioRxiv, 2023 - biorxiv.org
The biophysical properties of ligand binding heavily influence the ability of receptors to
specify cell fates. Understanding the rules by which ligand binding kinetics impact cell …