Using interactive Jupyter Notebooks and BioConda for FAIR and reproducible biomolecular simulation workflows

G Bayarri, P Andrio, JL Gelpí, A Hospital… - PLOS Computational …, 2024 - journals.plos.org
Interactive Jupyter Notebooks in combination with Conda environments can be used to
generate FAIR (Findable, Accessible, Interoperable and Reusable/Reproducible) …

F*** workflows: when parts of FAIR are missing

SR Wilkinson, G Eisenhauer… - 2022 IEEE 18th …, 2022 - ieeexplore.ieee.org
The FAIR principles for scientific data (Findable, Accessible, Interoperable, Reusable) are
also relevant to other digital objects such as research software and scientific workflows that …

Facilitating the sharing of electrophysiology data analysis results through in-depth provenance capture

CA Köhler, D Ulianych, S Grün, S Decker, M Denker - eneuro, 2024 - eneuro.org
Scientific research demands reproducibility and transparency, particularly in data-intensive
fields like electrophysiology. Electrophysiology data are typically analyzed using scripts that …

Making digital objects FAIR in high energy physics: An implementation for Universal FeynRules Output (UFO) models

MS Neubauer, A Roy, Z Wang - SciPost Physics Codebases, 2023 - scipost.org
Research in the data-intensive discipline of high energy physics (HEP) often relies on
domain-specific digital contents. Reproducibility of research relies on proper preservation of …

FAIR Principles for data and AI models in high energy physics research and education

A Roy - arXiv preprint arXiv:2211.15021, 2022 - arxiv.org
In recent years, digital object management practices to support findability, accessibility,
interoperability, and reusability (FAIR) have begun to be adopted across a number of data …

ir_metadata: An extensible metadata schema for IR experiments

T Breuer, J Keller, P Schaer - Proceedings of the 45th International ACM …, 2022 - dl.acm.org
The information retrieval (IR) community has a strong tradition of making the computational
artifacts and resources available for future reuse, allowing the validation of experimental …

Semantic Science: Publication Beyond the PDF

TT Procko, O Ochoa - SoutheastCon 2024, 2024 - ieeexplore.ieee.org
Scientific papers have evolved since the establishment of the Royal Society in the mid-17 th
century. Today, despite the interconnectedness of Internet discourse, scientific papers are …

[PDF][PDF] FAIR Principles for Better Citation: A Case Study with UFO Models

A Roy - 2022 - indico.cern.ch
FAIR Principles for Better Citation: A Case Study with UFO Models Page 1 FAIR Principles
for Better Citation: A Case Study with UFO Models Avik Roy Nov 23, 2022 1 University of …

[PDF][PDF] Nanotate: Semantically Annotating Experimental Protocols with Nanopublications.

OL Giraldo, M Ruano, RA Richardson, R Celebi… - SWAT4HCLS, 2022 - ceur-ws.org
An experimental protocol describes a sequence of tasks executed to perform experimental
research in biological and biomedical areas, eg genetics, immunology, neuroscience and …

[PDF][PDF] FAIR Principles for data and AI models in HEP Research and Education

A Roy - 2022 - agenda.infn.it
FAIR Principles for data and AI models in HEP Research and Education Page 1 FAIR
Principles for data and AI models in HEP Research and Education Avik Roy University of …