Agnostic sequencing for detection of viral pathogens

NPG Gauthier, SD Chorlton, M Krajden… - Clinical microbiology …, 2023 - Am Soc Microbiol
The advent of next-generation sequencing (NGS) technologies has expanded our ability to
detect and analyze microbial genomes and has yielded novel molecular approaches for …

Diagnostic and vaccination approaches for Newcastle disease virus in poultry: The current and emerging perspectives

MB Bello, K Yusoff, A Ideris, M Hair-Bejo… - BioMed research …, 2018 - Wiley Online Library
Newcastle disease (ND) is one of the most devastating diseases that considerably cripple
the global poultry industry. Because of its enormous socioeconomic importance and …

Retrospective detection of asymptomatic monkeypox virus infections among male sexual health clinic attendees in Belgium

I De Baetselier, C Van Dijck, C Kenyon, J Coppens… - Nature medicine, 2022 - nature.com
The magnitude of the 2022 multi-country monkeypox virus (MPXV) outbreak has surpassed
any preceding outbreak. It is unclear whether asymptomatic or otherwise undiagnosed …

Characterization of neurotropic HPAI H5N1 viruses with novel genome constellations and mammalian adaptive mutations in free-living mesocarnivores in Canada

TN Alkie, S Cox, C Embury-Hyatt… - Emerging microbes & …, 2023 - Taylor & Francis
The GsGd lineage (A/goose/Guangdong/1/1996) H5N1 virus was introduced to Canada in
2021/2022 through the Atlantic and East Asia-Australasia/Pacific flyways by migratory birds …

Outbreak investigation of Nipah virus disease in Kerala, India, 2018

G Arunkumar, R Chandni, DT Mourya… - The Journal of …, 2019 - academic.oup.com
Abstract Background Nipah Virus (NiV) is a highly fatal emerging zoonotic virus and a
potential threat to global health security. Here we describe the characteristics of the NiV …

Isolation of infectious Lloviu virus from Schreiber's bats in Hungary

G Kemenesi, GE Tóth, M Mayora-Neto, S Scott… - nature …, 2022 - nature.com
Some filoviruses can be transmitted to humans by zoonotic spillover events from their
natural host and filovirus outbreaks have occured with increasing frequency in the last years …

Complete genome sequence of SARS-CoV-2 in a tiger from a US zoological collection

L Wang, PK Mitchell, PP Calle, SL Bartlett… - Microbiology …, 2020 - Am Soc Microbiol
Complete Genome Sequence of SARS-CoV-2 in a Tiger from a US Zoological Collection |
Microbiology Resource Announcements CLOSE This Journal Anywhere Enter words …

Contamination issue in viral metagenomics: problems, solutions, and clinical perspectives

H Jurasz, T Pawłowski, K Perlejewski - Frontiers in Microbiology, 2021 - frontiersin.org
We describe the most common internal and external sources and types of contamination
encountered in viral metagenomic studies and discuss their negative impact on sequencing …

High throughput sequencing for the detection and characterization of RNA viruses

AH Fitzpatrick, A Rupnik, H O'Shea, F Crispie… - Frontiers in …, 2021 - frontiersin.org
This review aims to assess and recommend approaches for targeted and agnostic High
Throughput Sequencing of RNA viruses in a variety of sample matrices. HTS also referred to …

[HTML][HTML] Emerging technologies in the study of the virome

SE Smith, W Huang, K Tiamani, M Unterer… - Current opinion in …, 2022 - Elsevier
Highlights•New amplification methods reduce biases caused by whole genome
amplification•Biases caused by assembly can be avoided using long-read …