Splatter: simulation of single-cell RNA sequencing data

L Zappia, B Phipson, A Oshlack - Genome biology, 2017 - Springer
As single-cell RNA sequencing (scRNA-seq) technologies have rapidly developed, so have
analysis methods. Many methods have been tested, developed, and validated using …

Why do people use Artificial Intelligence (AI)-enabled voice assistants?

S Malodia, N Islam, P Kaur… - IEEE Transactions on …, 2021 - ieeexplore.ieee.org
Artificial-Intelligence-enabled voice assistants, such as Alexa and Siri, are increasingly
replacing search engines as consumers actively employ the former to accomplish a variety …

ecp: An R package for nonparametric multiple change point analysis of multivariate data

NA James, DS Matteson - arXiv preprint arXiv:1309.3295, 2013 - arxiv.org
There are many different ways in which change point analysis can be performed, from purely
parametric methods to those that are distribution free. The ecp package is designed to …

Botfinder: Finding bots in network traffic without deep packet inspection

F Tegeler, X Fu, G Vigna, C Kruegel - Proceedings of the 8th …, 2012 - dl.acm.org
Bots are the root cause of many security problems on the Internet, as they send spam, steal
information from infected machines, and perform distributed denial-of-service attacks. Many …

An enhanced deterministic K-Means clustering algorithm for cancer subtype prediction from gene expression data

N Nidheesh, KAA Nazeer, PM Ameer - Computers in biology and medicine, 2017 - Elsevier
Background Clustering algorithms with steps involving randomness usually give different
results on different executions for the same dataset. This non-deterministic nature of …

A Monte Carlo evaluation of weighted community detection algorithms

KM Gates, T Henry, D Steinley, DA Fair - Frontiers in neuroinformatics, 2016 - frontiersin.org
The past decade has been marked with a proliferation of community detection algorithms
that aim to organize nodes (eg, individuals, brain regions, variables) into modular structures …

Sierra: discovery of differential transcript usage from polyA-captured single-cell RNA-seq data

R Patrick, DT Humphreys, V Janbandhu, A Oshlack… - Genome biology, 2020 - Springer
High-throughput single-cell RNA-seq (scRNA-seq) is a powerful tool for studying gene
expression in single cells. Most current scRNA-seq bioinformatics tools focus on analysing …

Improving eDNA‐based protist diversity assessments using networks of amplicon sequence variants

D Forster, G Lentendu, S Filker… - Environmental …, 2019 - Wiley Online Library
Effective and precise grouping of highly similar sequences remains a major bottleneck in the
evaluation of high‐throughput sequencing datasets. Amplicon sequence variants (ASVs) …

Natural coinfection by Streptococcus agalactiae and Francisella noatunensis subsp. orientalis in farmed Nile tilapia (Oreochromis niloticus L.)

GBN Assis, GC Tavares, FL Pereira… - Journal of fish …, 2017 - Wiley Online Library
Streptococcus agalactiae and Francisella noatunensis subsp. orientalis (Fno) are important
pathogens for farm‐raised tilapia worldwide. There are no reports of coinfection caused by …

Improving the workflow to crack Small, Unbalanced, Noisy, but Genuine (SUNG) datasets in bioacoustics: The case of bonobo calls

V Arnaud, F Pellegrino, S Keenan… - PLoS computational …, 2023 - journals.plos.org
Despite the accumulation of data and studies, deciphering animal vocal communication
remains challenging. In most cases, researchers must deal with the sparse recordings …