Transcription factors and evolution: an integral part of gene expression

T Mitsis, A Efthimiadou… - World Academy of …, 2020 - spandidos-publications.com
Gene expression is a complex process that is essential to living organisms. Gene
expression plays the important role of converting information that is encoded in a gene into a …

Retinoid agonists in the targeting of heterotopic ossification

RJ Pignolo, M Pacifici - Cells, 2021 - mdpi.com
Retinoids are metabolic derivatives of vitamin A and regulate the function of many tissues
and organs both prenatally and postnatally. Active retinoids, such as all trans-retinoic acid …

Enhancer RNA profiling predicts transcription factor activity

JG Azofeifa, MA Allen, JR Hendrix, JD Rubin… - Genome …, 2018 - genome.cshlp.org
Transcription factors (TFs) exert their regulatory influence through the binding of enhancers,
resulting in coordination of gene expression programs. Active enhancers are often …

The human blood metabolome-transcriptome interface

J Bartel, J Krumsiek, K Schramm, J Adamski… - PLoS …, 2015 - journals.plos.org
Biological systems consist of multiple organizational levels all densely interacting with each
other to ensure function and flexibility of the system. Simultaneous analysis of cross …

Gene network inference and visualization tools for biologists: application to new human transcriptome datasets

D Hurley, H Araki, Y Tamada, B Dunmore… - Nucleic Acids …, 2012 - academic.oup.com
Gene regulatory networks inferred from RNA abundance data have generated significant
interest, but despite this, gene network approaches are used infrequently and often require …

Molecular structure, binding affinity, and biological activity in the epigenome

BZ Zsidó, C Hetényi - International Journal of Molecular Sciences, 2020 - mdpi.com
Development of valid structure–activity relationships (SARs) is a key to the elucidation of
pathomechanisms of epigenetic diseases and the development of efficient, new drugs. The …

Transcriptomic profiling identifies novel mechanisms of transcriptional regulation of the cytochrome P450 (Cyp)3a11 gene

G Taneja, S Maity, W Jiang, B Moorthy, C Coarfa… - Scientific Reports, 2019 - nature.com
Abstract Cytochrome P450 (CYP) 3A is the most abundant CYP enzyme in the human liver,
and a functional impairment of this enzyme leads to unanticipated adverse reactions and …

Distinct and competitive regulatory patterns of tumor suppressor genes and oncogenes in ovarian cancer

M Zhao, J Sun, Z Zhao - 2012 - journals.plos.org
Background So far, investigators have found numerous tumor suppressor genes (TSGs) and
oncogenes (OCGs) that control cell proliferation and apoptosis during cancer development …

Dynamic modification of the ETS transcription factor PEA3 by sumoylation and p300-mediated acetylation

B Guo, N Panagiotaki, S Warwood… - Nucleic acids …, 2011 - academic.oup.com
Transcription factor activity is often controlled through the dynamic use of post-translational
modifications. Two such modifications are acetylation and sumoylation, which both occur on …

[HTML][HTML] ExTRI: extraction of transcription regulation interactions from literature

M Vazquez, M Krallinger, F Leitner, M Kuiper… - … et Biophysica Acta (BBA …, 2022 - Elsevier
The regulation of gene transcription by transcription factors is a fundamental biological
process, yet the relations between transcription factors (TF) and their target genes (TG) are …