Advanced applications of RNA sequencing and challenges

Y Han, S Gao, K Muegge, W Zhang… - … and biology insights, 2015 - journals.sagepub.com
Next-generation sequencing technologies have revolutionarily advanced sequence-based
research with the advantages of high-throughput, high-sensitivity, and high-speed. RNA-seq …

Discovering and understanding oncogenic gene fusions through data intensive computational approaches

NS Latysheva, MM Babu - Nucleic acids research, 2016 - academic.oup.com
Although gene fusions have been recognized as important drivers of cancer for decades,
our understanding of the prevalence and function of gene fusions has been revolutionized …

[HTML][HTML] Precision nephrology identified tumor necrosis factor activation variability in minimal change disease and focal segmental glomerulosclerosis

LH Mariani, S Eddy, FM AlAkwaa, PJ McCown… - Kidney international, 2023 - Elsevier
The diagnosis of nephrotic syndrome relies on clinical presentation and descriptive patterns
of injury on kidney biopsies, but not specific to underlying pathobiology. Consequently, there …

Identifying fusion transcripts using next generation sequencing

S Kumar, SK Razzaq, AD Vo… - Wiley Interdisciplinary …, 2016 - Wiley Online Library
Fusion transcripts (ie, chimeric RNAs) resulting from gene fusions have been used
successfully for cancer diagnosis, prognosis, and therapeutic applications. In addition, many …

RNA biomarkers: diagnostic and prognostic potentials and recent developments of electrochemical biosensors

MN Islam, MK Masud, MH Haque, MSA Hossain… - Small …, 2017 - Wiley Online Library
Ribonucleic acids (RNAs) are considered as effective and minimally invasive biomarkers for
disease diagnosis and prognosis due to their critical role in the regulation of different cellular …

Platelet-derived growth factor receptors (PDGFRs) fusion genes involvement in hematological malignancies

K Appiah-Kubi, T Lan, Y Wang, H Qian, M Wu… - Critical reviews in …, 2017 - Elsevier
Purpose To investigate oncogenic platelet-derived growth factor receptor (PDGFR) fusion
genes involvement in hematological malignancies, the advances in the PDGFR fusion …

AGFusion: annotate and visualize gene fusions

C Murphy, O Elemento - BioRxiv, 2016 - biorxiv.org
The discovery of novel gene fusions in tumor samples has rapidly accelerated with the rise
of next-generation sequencing. A growing number of tools enable discovery of gene fusions …

[HTML][HTML] Long non-coding rnas as functional codes for oral cancer: translational potential, progress and promises

CS Lei, HJ Kung, JW Shih - International journal of molecular sciences, 2021 - mdpi.com
Oral cancer is one of the leading malignant tumors worldwide. Despite the advent of
multidisciplinary approaches, the overall prognosis of patients with oral cancer is poor …

ERG oncoprotein inhibits ANXA2 expression and function in prostate cancer

NB Griner, D Young, P Chaudhary, AA Mohamed… - Molecular Cancer …, 2015 - AACR
Overexpression of ERG in the prostate epithelium, due to chromosomal translocations,
contributes to prostate tumorigenesis. Here, genomic analysis of ERG siRNA-treated …

Multidimensional data integration identifies tumor necrosis factor activation in nephrotic syndrome: a model for precision nephrology

LH Mariani, S Eddy, FM AlAkwaa, PJ McCown… - Medrxiv, 2021 - medrxiv.org
Background Classification of nephrotic syndrome relies on clinical presentation and
descriptive patterns of injury on kidney biopsies. This approach does not reflect underlying …