The new (dis) order in RNA regulation

AI Järvelin, M Noerenberg, I Davis… - Cell Communication and …, 2016 - Springer
RNA-binding proteins play a key role in the regulation of all aspects of RNA metabolism,
from the synthesis of RNA to its decay. Protein-RNA interactions have been thought to be …

RNA uridylation: a key posttranscriptional modification shaping the coding and noncoding transcriptome

C De Almeida, H Scheer, H Zuber… - Wiley Interdisciplinary …, 2018 - Wiley Online Library
RNA uridylation is a potent and widespread posttranscriptional regulator of gene
expression. RNA uridylation has been detected in a range of eukaryotes including …

[HTML][HTML] Uridylation by TUT4 and TUT7 marks mRNA for degradation

J Lim, M Ha, H Chang, SC Kwon, DK Simanshu… - Cell, 2014 - cell.com
Uridylation occurs pervasively on mRNAs, yet its mechanism and significance remain
unknown. By applying TAIL-seq, we identify TUT4 and TUT7 (TUT4/7), also known as …

Terminal uridylyltransferases execute programmed clearance of maternal transcriptome in vertebrate embryos

H Chang, J Yeo, J Kim, H Kim, J Lim, M Lee, HH Kim… - Molecular Cell, 2018 - cell.com
During the maternal-to-zygotic transition (MZT), maternal RNAs are actively degraded and
replaced by newly synthesized zygotic transcripts in a highly coordinated manner. However …

Protein-RNA networks revealed through covalent RNA marks

CP Lapointe, D Wilinski, HAJ Saunders, M Wickens - Nature methods, 2015 - nature.com
Protein-RNA networks are ubiquitous and central in biological control. We present an
approach termed RNA Tagging that enables the user to identify protein-RNA interactions in …

Uridylation and PABP cooperate to repair mRNA deadenylated ends in Arabidopsis

H Zuber, H Scheer, E Ferrier, FM Sement, P Mercier… - Cell reports, 2016 - cell.com
Uridylation emerges as a key modification promoting mRNA degradation in eukaryotes. In
addition, uridylation by URT1 prevents the accumulation of excessively deadenylated …

Global pairwise RNA interaction landscapes reveal core features of protein recognition

Q Zhou, N Kunder, JA De la Paz, AE Lasley… - Nature …, 2018 - nature.com
RNA–protein interactions permeate biology. Transcription, translation, and splicing all hinge
on the recognition of structured RNA elements by RNA-binding proteins. Models of RNA …

The role of 3′ end uridylation in RNA metabolism and cellular physiology

D Zigáčková, Š Vaňáčová - Philosophical Transactions of …, 2018 - royalsocietypublishing.org
Most eukaryotic RNAs are posttranscriptionally modified. The majority of modifications
promote RNA maturation, others may regulate function and stability. The 3′ terminal non …

Serine/Arginine-rich protein family of splicing regulators: New approaches to study splice isoform functions

M Morton, N AlTamimi, H Butt, ASN Reddy, M Mahfouz - Plant Science, 2019 - Elsevier
Abstract Serine/arginine-rich (SR) proteins are conserved RNA-binding proteins that play
major roles in RNA metabolism. They function as molecular adaptors, facilitate spliceosome …

Uridylation earmarks mRNAs for degradation… and more

H Scheer, H Zuber, C De Almeida, D Gagliardi - Trends in Genetics, 2016 - cell.com
Groundbreaking discoveries have uncovered the widespread post-transcriptional
modifications of all classes of RNA. These studies have led to the emerging notion of an …