Energy-driven genome regulation by ATP-dependent chromatin remodellers

S Eustermann, AB Patel, KP Hopfner, Y He… - … Reviews Molecular Cell …, 2024 - nature.com
The packaging of DNA into chromatin in eukaryotes regulates gene transcription, DNA
replication and DNA repair. ATP-dependent chromatin remodelling enzymes (re) arrange …

Helix-loop-helix proteins: regulators of transcription in eucaryotic organisms

ME Massari, C Murre - Molecular and cellular biology, 2000 - Taylor & Francis
The helix-loop-helix (HLH) family of transcriptional regulatory proteins are key players in a
wide array of developmental processes. Over 240 HLH proteins have been identified to date …

Genome-Scale Identification of Nucleosome Positions in S. cerevisiae

GC Yuan, YJ Liu, MF Dion, MD Slack, LF Wu… - Science, 2005 - science.org
The positioning of nucleosomes along chromatin has been implicated in the regulation of
gene expression in eukaryotic cells, because packaging DNA into nucleosomes affects …

[HTML][HTML] Mechanisms that specify promoter nucleosome location and identity

PD Hartley, HD Madhani - Cell, 2009 - cell.com
The chromatin architecture of eukaryotic gene promoters is generally characterized by a
nucleosome-free region (NFR) flanked by at least one H2A. Z variant nucleosome …

Single-Nucleosome Mapping of Histone Modifications in S. cerevisiae

CL Liu, T Kaplan, M Kim, S Buratowski… - PLoS …, 2005 - journals.plos.org
Covalent modification of histone proteins plays a role in virtually every process on eukaryotic
DNA, from transcription to DNA repair. Many different residues can be covalently modified …

[HTML][HTML] Nucleosome positioning: how is it established, and why does it matter?

M Radman-Livaja, OJ Rando - Developmental biology, 2010 - Elsevier
Packaging of eukaryotic genomes into chromatin affects every process that occurs on DNA.
The positioning of nucleosomes on underlying DNA plays a key role in the regulation of …

Nucleosomes unfold completely at a transcriptionally active promoter

H Boeger, J Griesenbeck, JS Strattan, RD Kornberg - Molecular cell, 2003 - cell.com
It has long been known that promoter DNA is converted to a nuclease-sensitive state upon
transcriptional activation. Recent findings have raised the possibility that this conversion …

Regulation of PHO4 nuclear localization by the PHO80-PHO85 cyclin-CDK complex

EM O'Neill, A Kaffman, ER Jolly, EK O'Shea - Science, 1996 - science.org
PHO4, a transcription factor required for induction of the PHO5 gene in response to
phosphate starvation, is phosphorylated by the PHO80-PHO85 cyclin-CDK (cyclin …

Promoter Architecture and Promoter Engineering in Saccharomyces cerevisiae

H Tang, Y Wu, J Deng, N Chen, Z Zheng, Y Wei, X Luo… - Metabolites, 2020 - mdpi.com
Promoters play an essential role in the regulation of gene expression for fine-tuning genetic
circuits and metabolic pathways in Saccharomyces cerevisiae (S. cerevisiae). However …

C H… O hydrogen bonding in biology

MC Wahl, M Sundaralingam - Trends in biochemical sciences, 1997 - cell.com
C=H.,oO hy&'ogen bonding in biology Page 1 T~BS 22 - MARCH 1997 proteins) as well as
proteins that modify chromatin (acetylases and deacetylases). The recent completion 9f the …