The ubiquitin–26S proteasome system at the nexus of plant biology

RD Vierstra - Nature reviews Molecular cell biology, 2009 - nature.com
Plants, like other eukaryotes, rely on proteolysis to control the abundance of key regulatory
proteins and enzymes. Strikingly, genome-wide studies have revealed that the ubiquitin-26S …

Resolving the complexity of ubiquitin networks

K Kliza, K Husnjak - Frontiers in molecular biosciences, 2020 - frontiersin.org
Ubiquitination regulates nearly all cellular processes by coordinated activity of ubiquitin
writers (E1, E2, and E3 enzymes), erasers (deubiquitinating enzymes) and readers (proteins …

[HTML][HTML] Systematic and quantitative assessment of the ubiquitin-modified proteome

W Kim, EJ Bennett, EL Huttlin, A Guo, J Li… - Molecular cell, 2011 - cell.com
Despite the diverse biological pathways known to be regulated by ubiquitylation, global
identification of substrates that are targeted for ubiquitylation has remained a challenge. To …

Multivesicular bodies associate with components of miRNA effector complexes and modulate miRNA activity

DJ Gibbings, C Ciaudo, M Erhardt, O Voinnet - Nature cell biology, 2009 - nature.com
In animals, P-bodies or GW-bodies appear to cause the congregation of proteins involved in
microRNA (miRNA)-mediated post-transcriptional silencing. The localization of P-bodies …

Modification‐specific proteomics: strategies for characterization of post‐translational modifications using enrichment techniques

Y Zhao, ON Jensen - Proteomics, 2009 - Wiley Online Library
More than 300 different types of protein post‐translational modifications (PTMs) have been
described, many of which are known to have pivotal roles in cellular physiology and …

Control of mitochondrial biogenesis and function by the ubiquitin–proteasome system

P Bragoszewski, M Turek, A Chacinska - Open biology, 2017 - royalsocietypublishing.org
Mitochondria are pivotal organelles in eukaryotic cells. The complex proteome of
mitochondria comprises proteins that are encoded by nuclear and mitochondrial genomes …

Exosomes as nucleic acid nanocarriers

JG van den Boorn, J Daßler, C Coch, M Schlee… - Advanced drug delivery …, 2013 - Elsevier
Exosomes are nano-sized vesicles produced naturally by many cell types. They are
specifically loaded with nucleic acid cargo, dependent on the exosome-producing cell and …

[HTML][HTML] Analysis of nucleolar protein dynamics reveals the nuclear degradation of ribosomal proteins

YW Lam, AI Lamond, M Mann, JS Andersen - Current Biology, 2007 - cell.com
Background The nucleolus is a subnuclear organelle in which rRNAs are transcribed,
processed, and assembled with ribosomal proteins into ribosome subunits. Mass …

A tandem affinity tag for two-step purification under fully denaturing conditions: application in ubiquitin profiling and protein complex identification combined with in …

C Tagwerker, K Flick, M Cui, C Guerrero, Y Dou… - Molecular & Cellular …, 2006 - ASBMB
Tandem affinity strategies reach exceptional protein purification grades and have
considerably improved the outcome of mass spectrometry-based proteomic experiments …

iMethyl‐PseAAC: Identification of Protein Methylation Sites via a Pseudo Amino Acid Composition Approach

WR Qiu, X Xiao, WZ Lin… - BioMed research …, 2014 - Wiley Online Library
Before becoming the native proteins during the biosynthesis, their polypeptide chains
created by ribosome's translating mRNA will undergo a series of “product‐forming” steps …