Multiple sequence alignment containing a sequence of regular expressions

AN Arslan - … IEEE Symposium on Computational Intelligence in …, 2005 - ieeexplore.ieee.org
A classical algorithm for the pairwise sequence alignment is the Smith Waterman algorithm
which uses dynamic programming. The algorithm computes the maximum score of …

Efficient parallel algorithm for multiple sequence alignments with regular expression constraints on graphics processing units

CY Lin, YS Lin - International Journal of Computational …, 2014 - inderscienceonline.com
Multiple sequence alignments with constraints has become an important problem in
computational biology. The concept of constrained sequence alignment is proposed to …

An improved algorithm for the regular expression constrained multiple sequence alignment problem

AN Arslan, D He - Sixth IEEE Symposium on BioInformatics and …, 2006 - ieeexplore.ieee.org
Constrained sequence alignment has been proposed as a way for incorporating biologists'
knowledge about common structures or functions into the alignment process. For alignment …

[PDF][PDF] FastPCMSA: An Improved Parallel Algorithm for the Constrained Multiple Sequence Alignment Problem.

D He, AN Arslan - FCS, 2006 - Citeseer
The constrained multiple sequence alignment (CMSA) problem is to align given sequences
S1, S2,..., Sn to maximize a similarity score with the constraint that P is “contained” in the …

GPU-based cloud service for multiple sequence alignments with regular expression constrains

YS Lin, CY Lin, YC Chung - 4th IEEE International Conference …, 2012 - ieeexplore.ieee.org
Multiple sequence alignments with constrains has become an important problem in the
computational biology. The concept of constrained sequence alignment is proposed to …

附加限制條件的最長共同子序列問題之演算法設計

陳怡靜 - 2010 - tdr.lib.ntu.edu.tw
本篇論文探討數個最長共同子序列的變異問題, 是由分子生物學和序列比對的實際應用與理論
興趣發展而來. 在論文的第一部份, 我們研究四個附加條件限制的最長共同子序列問題 …

[PDF][PDF] Space-Efficient Parallel Algorithms for the Constrained Multiple Sequence Alignment Problem.

D He, AN Arslan - BIOCOMP, 2006 - Citeseer
Space-Efficient Parallel Algorithms for the Constrained Multiple Sequence Alignment Problem
Page 1 Space-Efficient Parallel Algorithms for the Constrained Multiple Sequence Alignment …

Human pose tracking by hierarchical manifold searching

A Moutzouris, JM del Rincón, JC Nebel… - Proceedings of the …, 2012 - ieeexplore.ieee.org
This paper proposes an activity-specific 3D human pose tracking system from multiple
camera views. Dimensionality reduction is used to represent a single activity in a hierarchy …

Multiple sequence alignments with regular expression constraints on a cloud service system

YS Lin, CY Lin, HC Chi, YC Chung - International Journal of Grid and …, 2013 - igi-global.com
Multiple sequence alignments with constraints are of priority concern in computational
biology. Constrained sequence alignment incorporates the domain knowledge of biologists …

A prototypical platform for architecture oriented development

P Tabeling, R Hofmann - 13th Annual IEEE International …, 2006 - ieeexplore.ieee.org
For several years, researchers have required the development of complex systems to be
based on architectural models. Nevertheless, popular programming environments offer …