Architectural proteins: regulators of 3D genome organization in cell fate

E Gómez-Díaz, VG Corces - Trends in cell biology, 2014 - cell.com
The relation between alterations in chromatin structure and changes in gene expression
during cell differentiation has served as a paradigm to understand the link between genome …

The diverse functional LINCs of the nuclear envelope to the cytoskeleton and chromatin

A Rothballer, U Kutay - Chromosoma, 2013 - Springer
The nuclear envelope (NE) is connected to the different types of cytoskeletal elements by
linker of nucleoskeleton and cytoskeleton (LINC) complexes. LINC complexes exist from …

The fitness landscape of a tRNA gene

C Li, W Qian, CJ Maclean, J Zhang - Science, 2016 - science.org
Fitness landscapes describe the genotype-fitness relationship and represent major
determinants of evolutionary trajectories. However, the vast genotype space, coupled with …

TFIIIC binding to Alu elements controls gene expression via chromatin looping and histone acetylation

R Ferrari, LI de Llobet Cucalon, C Di Vona, F Le Dilly… - Molecular cell, 2020 - cell.com
How repetitive elements, epigenetic modifications, and architectural proteins interact
ensuring proper genome expression remains poorly understood. Here, we report regulatory …

Binding of TFIIIC to sine elements controls the relocation of activity-dependent neuronal genes to transcription factories

L Crepaldi, C Policarpi, A Coatti, WT Sherlock… - PLoS …, 2013 - journals.plos.org
In neurons, the timely and accurate expression of genes in response to synaptic activity
relies on the interplay between epigenetic modifications of histones, recruitment of …

Budding yeast Rif1 binds to replication origins and protects DNA at blocked replication forks

S Hiraga, C Monerawela, Y Katou, S Shaw… - EMBO …, 2018 - embopress.org
Despite its evolutionarily conserved function in controlling DNA replication, the
chromosomal binding sites of the budding yeast Rif1 protein are not well understood. Here …

Coordination of tRNA transcription with export at nuclear pore complexes in budding yeast

M Chen, MR Gartenberg - Genes & development, 2014 - genesdev.cshlp.org
tRNAs are encoded by RNA polymerase III-transcribed genes that reside at seemingly
random intervals along the chromosomes of budding yeast. Existing evidence suggests that …

tDNA insulators and the emerging role of TFIIIC in genome organization

K Van Bortle, VG Corces - Transcription, 2012 - Taylor & Francis
Recent findings provide evidence that tDNAs function as chromatin insulators from yeast to
humans. TFIIIC, a transcription factor that interacts with the B-box in tDNAs as well as …

The conserved chromatin remodeler SMARCAD1 interacts with TFIIIC and architectural proteins in human and mouse

P Sachs, P Bergmaier, K Treutwein, JE Mermoud - Genes, 2023 - mdpi.com
In vertebrates, SMARCAD1 participates in transcriptional regulation, heterochromatin
maintenance, DNA repair, and replication. The molecular basis underlying its involvement in …

TFIIIC bound DNA elements in nuclear organization and insulation

JG Kirkland, JR Raab, RT Kamakaka - Biochimica et Biophysica Acta (BBA) …, 2013 - Elsevier
tRNA genes (tDNAs) have been known to have barrier insulator function in budding yeast,
Saccharomyces cerevisiae, for over a decade. tDNAs also play a role in genome …