Achievements and challenges of genomics-assisted breeding in forest trees: From marker-assisted selection to genome editing

S Ahmar, P Ballesta, M Ali, F Mora-Poblete - International Journal of …, 2021 - mdpi.com
Forest tree breeding efforts have focused mainly on improving traits of economic importance,
selecting trees suited to new environments or generating trees that are more resilient to …

[HTML][HTML] Current status and trends in forest genomics

D Borthakur, V Busov, XH Cao, Q Du, O Gailing… - Forestry …, 2022 - maxapress.com
Forests are not only the most predominant of the Earth's terrestrial ecosystems, but are also
the core supply for essential products for human use. However, global climate change and …

The western redcedar genome reveals low genetic diversity in a self-compatible conifer

TJ Shalev, OG El-Dien, MMS Yuen… - Genome …, 2022 - genome.cshlp.org
We assembled the 9.8-Gbp genome of western redcedar (WRC; Thuja plicata), an
ecologically and economically important conifer species of the Cupressaceae. The genome …

Evaluation of the efficiency of genomic versus pedigree predictions for growth and wood quality traits in Scots pine

A Calleja-Rodriguez, J Pan, T Funda, Z Chen, J Baison… - BMC genomics, 2020 - Springer
Background Genomic selection (GS) or genomic prediction is a promising approach for tree
breeding to obtain higher genetic gains by shortening time of progeny testing in breeding …

Utilization of genotyping-by-sequencing (GBS) for rice pre-breeding and improvement: A review

VP Reyes, JK Kitony, S Nishiuchi, D Makihara, K Doi - Life, 2022 - mdpi.com
Molecular markers play a crucial role in the improvement of rice. To benefit from these
markers, genotyping is carried out to identify the differences at a specific position in the …

Marker selection in multivariate genomic prediction improves accuracy of low heritability traits

J Klápště, HS Dungey, EJ Telfer, M Suontama… - Frontiers in …, 2020 - frontiersin.org
Multivariate analysis using mixed models allows for the exploration of genetic correlations
between traits. Additionally, the transition to a genomic based approach is simplified by …

Toward genomic selection in Pinus taeda: Integrating resources to support array design in a complex conifer genome

M Caballero, E Lauer, J Bennett… - Applications in Plant …, 2021 - Wiley Online Library
Premise An informatics approach was used for the construction of an Axiom genotyping
array from heterogeneous, high‐throughput sequence data to assess the complex genome …

Genomic prediction of complex traits in perennial plants: a case for forest trees

F Isik - Genomic prediction of complex traits: Methods and …, 2022 - Springer
This chapter provides an overview of the genomic selection progress in long-lived forest tree
species. Factors affecting the prediction accuracy in genomic prediction are assessed with …

Identification and high-throughput genotyping of single nucleotide polymorphism markers in a non-model conifer (Abies nordmanniana (Steven) Spach)

K Ousmael, RW Whetten, J Xu, UB Nielsen… - Scientific Reports, 2023 - nature.com
Single nucleotide polymorphism (SNP) markers are powerful tools for investigating
population structures, linkage analysis, and genome-wide association studies, as well as for …

A genome‐wide SNP genotyping resource for tropical pine tree species

C Jackson, N Christie, SM Reynolds… - Molecular Ecology …, 2022 - Wiley Online Library
We performed gene and genome targeted SNP discovery towards the development of a
genome‐wide, multispecies genotyping array for tropical pines. Pooled RNA‐seq data from …