Designing a transcriptome next‐generation sequencing project for a nonmodel plant species1
SR Strickler, A Bombarely… - American journal of …, 2012 - Wiley Online Library
The application of next‐generation sequencing (NGS) to transcriptomics, commonly called
RNA‐seq, allows the nearly complete characterization of transcriptomic events occurring in …
RNA‐seq, allows the nearly complete characterization of transcriptomic events occurring in …
Fast-forward genetics enabled by new sequencing technologies
K Schneeberger, D Weigel - Trends in plant science, 2011 - cell.com
New sequencing technologies are dramatically accelerating progress in forward genetics,
and the use of such methods for the rapid identification of mutant alleles will be soon routine …
and the use of such methods for the rapid identification of mutant alleles will be soon routine …
The simple fool's guide to population genomics via RNA‐Seq: an introduction to high‐throughput sequencing data analysis
High‐throughput sequencing technologies are currently revolutionizing the field of biology
and medicine, yet bioinformatic challenges in analysing very large data sets have slowed …
and medicine, yet bioinformatic challenges in analysing very large data sets have slowed …
A draft Musa balbisiana genome sequence for molecular genetics in polyploid, inter- and intra-specific Musa hybrids
Background Modern banana cultivars are primarily interspecific triploid hybrids of two
species, Musa acuminata and Musa balbisiana, which respectively contribute the A-and B …
species, Musa acuminata and Musa balbisiana, which respectively contribute the A-and B …
An RNA-Seq transcriptome analysis of orthophosphate-deficient white lupin reveals novel insights into phosphorus acclimation in plants
JA O'Rourke, SS Yang, SS Miller, B Bucciarelli… - Plant …, 2013 - academic.oup.com
Phosphorus, in its orthophosphate form (Pi), is one of the most limiting macronutrients in
soils for plant growth and development. However, the whole-genome molecular …
soils for plant growth and development. However, the whole-genome molecular …
The Eucalyptus terpene synthase gene family
Background Terpenoids are abundant in the foliage of Eucalyptus, providing the
characteristic smell as well as being valuable economically and influencing ecological …
characteristic smell as well as being valuable economically and influencing ecological …
De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity
Background Among next generation sequence technologies, platforms such as Illumina and
SOLiD produce short reads but with higher coverage and lower cost per sequenced …
SOLiD produce short reads but with higher coverage and lower cost per sequenced …
The First Insight into the Tissue Specific Taxus Transcriptome via Illumina Second Generation Sequencing
DC Hao, GB Ge, PG Xiao, YY Zhang, L Yang - PLoS one, 2011 - journals.plos.org
Background Illumina second generation sequencing is now an efficient route for generating
enormous sequence collections that represent expressed genes and quantitate expression …
enormous sequence collections that represent expressed genes and quantitate expression …
Catalyzing plant science research with RNA-seq
Next generation DNA sequencing technologies are driving increasingly rapid, affordable
and high resolution analyses of plant transcriptomes through sequencing of their associated …
and high resolution analyses of plant transcriptomes through sequencing of their associated …
Genome‐wide analysis of the lignin toolbox of Eucalyptus grandis
V Carocha, M Soler, C Hefer, H Cassan‐Wang… - New …, 2015 - Wiley Online Library
Lignin, a major component of secondary cell walls, hinders the optimal processing of wood
for industrial uses. The recent availability of the E ucalyptus grandis genome sequence …
for industrial uses. The recent availability of the E ucalyptus grandis genome sequence …