DNA sequencing: an overview of solid-state and biological nanopore-based methods

MM Mohammadi, O Bavi - Biophysical reviews, 2022 - Springer
The field of sequencing is a topic of significant interest since its emergence and has become
increasingly important over time. Impressive achievements have been obtained in this field …

Analyzing modern biomolecules: the revolution of nucleic-acid sequencing–Review

G Dorado, S Gálvez, TE Rosales, VF Vásquez… - Biomolecules, 2021 - mdpi.com
Recent developments have revolutionized the study of biomolecules. Among them are
molecular markers, amplification and sequencing of nucleic acids. The latter is classified into …

Transcriptomics, proteomics, and metabolomics interventions prompt crop improvement against metal (loid) toxicity

A Raza, H Salehi, S Bashir, J Tabassum, M Jamla… - Plant cell reports, 2024 - Springer
The escalating challenges posed by metal (loid) toxicity in agricultural ecosystems,
exacerbated by rapid climate change and anthropogenic pressures, demand urgent …

A review of artificial intelligence-assisted omics techniques in plant defense: current trends and future directions

S Murmu, D Sinha, H Chaurasia, S Sharma… - Frontiers in Plant …, 2024 - frontiersin.org
Plants intricately deploy defense systems to counter diverse biotic and abiotic stresses.
Omics technologies, spanning genomics, transcriptomics, proteomics, and metabolomics …

OMICs, epigenetics, and genome editing techniques for food and nutritional security

YV Gogolev, S Ahmar, BA Akpinar, H Budak… - Plants, 2021 - mdpi.com
The incredible success of crop breeding and agricultural innovation in the last century
greatly contributed to the Green Revolution, which significantly increased yields and …

Gene regulatory networks in abiotic stress responses via single-cell sequencing and spatial technologies: Advances and opportunities

M Jain - Current Opinion in Plant Biology, 2024 - Elsevier
Understanding intricate gene regulatory networks (GRNs) orchestrating responses to abiotic
stresses is crucial for enhancing climate resilience in crop plants. Recent advancements in …

Decrypting proteomics, transcriptomics, genomics, and integrated omics for augmenting the abiotic, biotic, and climate change stress resilience in plants

R Choudhary, F Ahmad, C Kaya, SK Upadhyay… - Journal of Plant …, 2025 - Elsevier
As our planet faces increasing environmental challenges, such as biotic pressures, abiotic
stressors, and climate change, it is crucial to understand the complex mechanisms that …

Role of turgor-pressure induced boundary tension in the maintenance of the shoot apical meristem of Arabidopsis thaliana

C Michael, M Banwarth-Kuhn… - Journal of the …, 2023 - royalsocietypublishing.org
In plants, the robust maintenance of tissue structure is crucial to supporting its functionality.
The multi-layered shoot apical meristem (SAM) of Arabidopsis, containing stem cells, is an …

[HTML][HTML] Catching the Big Fish in Big Data: A Meta-Analysis of Zebrafish Kidney scRNA-Seq Datasets Highlights Conserved Molecular Profiles of Macrophages and …

AV Bobrovskikh, US Zubairova, LG Naumenko… - …, 2024 - pmc.ncbi.nlm.nih.gov
Simple Summary This paper presents a meta-analysis of currently available single-cell RNA
sequencing (scRNAseq) datasets from zebrafish kidneys. Our work aims to identify key …

Fishing Innate Immune System Properties through the Transcriptomic Single-Cell Data of Teleostei

AV Bobrovskikh, US Zubairova, AV Doroshkov - Biology, 2023 - mdpi.com
Simple Summary The study of the innate immune system's (IIS) properties is one of the key
tasks of modern immunology, since it could help enhance the quality of therapy and drug …